Related papers: Pseudoknot RNA structures with arc-length $\ge 4$

A graph construction that produces a k-regular graph on n vertices for any choice of k >= 3 and n = m(k+1) for integer m >= 2 is described. The number of Hamiltonian cycles in such graphs can be explicitly determined as a function of n and…

We study the structural constraint of random scale-free networks that determines possible combinations of the degree exponent $\gamma$ and the upper cutoff $k_c$ in the thermodynamic limit. We employ the framework of graphicality…

If a finitely generated torsion free group K has the property that all finitely generated subgroups S of K are either small or have growth constant bounded uniformly away from 1 then a non proper HNN extension G of K, that is a semidirect…

A drawing of a graph in the plane is {\it pseudolinear} if the edges of the drawing can be extended to doubly-infinite curves that form an arrangement of pseudolines, that is, any pair of edges crosses precisely once. A special case are…

We consider additive spanners of unweighted undirected graphs. Let $G$ be a graph and $H$ a subgraph of $G$. The most na\"ive way to construct an additive $k$-spanner of $G$ is the following: As long as $H$ is not an additive $k$-spanner…

Let $K_m^{(3)}$ denote the complete $3$-uniform hypergraph on $m$ vertices and $S_n^{(3)}$ the $3$-uniform hypergraph on $n+1$ vertices consisting of all $\binom{n}{2}$ edges incident to a given vertex. Whereas many hypergraph Ramsey…

A knot is a closed loop in space without self-intersection. Two knots are equivalent if there is a self homeomorphism of space bringing one onto the other. An arc presentation is an embedding of a knot in the union of finitely many half…

Two subsets $A,B$ of an $n$-element ground set $X$ are said to be \emph{crossing}, if none of the four sets $A\cap B$, $A\setminus B$, $B\setminus A$ and $X\setminus(A\cup B)$ are empty. It was conjectured by Karzanov and Lomonosov forty…

We suggest a new type of problem about distances in graphs and make several conjectures. As a first step towards proving them, we show that for sufficiently large values of n and k, a graph on n vertices that has no three vertices at…

Let $K_k$, $C_k$, $T_k$, and $P_{k}$ denote a complete graph on $k$ vertices, a cycle on $k$ vertices, a tree on $k+1$ vertices, and a path on $k+1$ vertices, respectively. Let $K_{m}-H$ be the graph obtained from $K_{m}$ by removing the…

In Francis and Steel (2015), it was shown that there exists non-trivial networks on $4$ leaves upon which the distance metric affords a metric on a tree which is not the base tree of the network. In this paper we extend this result in two…

We enumerate possible topologies of pseudoknots in single-stranded RNA molecules. We use a steepest-descent approximation in the large N matrix field theory, and a Feynman diagram formalism to describe the resulting pseudoknot structure.

It is known that graphs on n vertices with minimum degree at least 3 have spanning trees with at least n/4+2 leaves and that this can be improved to (n+4)/3 for cubic graphs without the diamond K_4-e as a subgraph. We generalize the second…

In this note, we give short proofs of three theorems about intersection problems. The first one is a determination of the maximum size of a nontrivial $k$-uniform, $d$-wise intersecting family for $n\ge \left(1+\frac{d}{2}\right)(k-d+2)$,…

We generalize the notion of linear chord diagrams to the case of matched sets of size $k$, which we call $k$-chord diagrams. We provide formal generating functions and recurrence relations enumerating these $k$-chord diagrams by the number…

Suppose $c_n(\sigma)$ denotes the number of cyclic permutations in $\mathcal{S}_n$ that avoid a pattern $\sigma$. In this paper, we define partial groupoid structures on cyclic pattern-avoiding permutations that allow us to build larger…

For every $n \geq 4$, we demonstrate the existence of non-isotopic smooth $(n-2)$-knots in $S^n$ with diffeomorphic traces by generalising the RBG link construction to all dimensions. Conversely, we prove that for every $n \geq 4$, the…

An endhered (end-adhered) pattern is a subset of arcs in matchings, such that the corresponding starting points are consecutive and the same holds for the ending points. Such patterns are in one-to-one correspondence with the permutations.…

For positive integers $n>k>t$ let $\binom{[n]}{k}$ denote the collection of all $k$-subsets of the standard $n$-element set $[n]=\{1,\ldots,n\}$. Subsets of $\binom{[n]}{k}$ are called $k$-graphs. A $k$-graph $\mathcal{F}$ is called…

Sergey Kitaev has shown that the exponential generating function for permutations avoiding the generalized pattern $\sigma$-$k$, where $\sigma$ is a pattern without dashes and $k$ is one greater than the biggest element in $\sigma$, is…