Related papers: Pseudoknot RNA structures with arc-length $\ge 4$

We study the statistical distribution of primitive sublattices in the space of lattices $\mathrm{SL}(n,\mathbb Z)\backslash\mathrm{SL}(n,\mathbb R)$. A central difficulty in this area is that the second moment of the counting function for…

Given a random RNA secondary structure, $S$, we study RNA sequences having fixed ratios of nuclotides that are compatible with $S$. We perform this analysis for RNA secondary structures subject to various base pairing rules and minimum arc-…

Let $\alpha(n)$ be the least number $k$ for which there exists a simple graph with $k$ vertices having precisely $n \geq 3$ spanning trees. Similarly, define $\beta(n)$ as the least number $k$ for which there exists a simple graph with $k$…

We determine the size of $k$-core in a large class of dense graph sequences. Let $G_n$ be a sequence of undirected, $n$-vertex graphs with edge weights $\{a^n_{i,j}\}_{i,j \in [n]}$ that converges to a kernel $W:[0,1]^2\to [0,+\infty)$ in…

By considering negative surgeries on a knot $K$ in $S^3$, we derive a lower bound to the non-orientable slice genus $\gamma_4(K)$ in terms of the signature $\sigma(K)$ and the concordance invariants $V_i(\overline{K})$, which strengthens a…

Given an orientation-preserving diffeomorphism of the interval [0;1], consider the uniform norm of the differential of its n-th iteration. We get a function of n called the growth sequence. Its asymptotic behaviour is an interesting…

Linear upper bounds may be derived by imposing specific structural conditions on a generating set, such as additional constraints on ranks, eigenvalues, or the degree of the minimal polynomial of the generating matrices. This paper…

In STOC'95 [ADMSS'95] Arya et al. showed that any set of $n$ points in $\mathbb R^d$ admits a $(1+\epsilon)$-spanner with hop-diameter at most 2 (respectively, 3) and $O(n \log n)$ edges (resp., $O(n \log \log n)$ edges). They also gave a…

The non-orientable 4-genus of a knot K in the three sphere is defined to be the minimum first Betti number of a non-orientable surface F in the four-ball so that K bounds F. We will survey the tools used to compute the non-orientable…

Within biology, it is of interest to construct DNA complexes of a certain shape. These complexes can be represented through graph theory, using edges to model strands of DNA joined at junctions, represented by vertices. Because guided…

The Ramsey number $r_k(s,n)$ is the minimum $N$ such that for every red-blue coloring of the $k$-tuples of $\{1,\ldots, N\}$, there are $s$ integers such that every $k$-tuple among them is red, or $n$ integers such that every $k$-tuple…

In this paper, we prove that every $n$-vertex connected $K_{1,5}$-free graph $G$ with $\sigma_4(G)\geq n-1$ contains a spanning tree with at most $5$ leaves and branch vertices in total. Moreover, the degree sum condition "$\sigma_4(G)\geq…

The bidimensionality of a set of vertices $X$ in a graph $G$ is the maximum $k$ for which $G$ contains as a $X$-rooted minor the $(k \times k)$-grid. This notion allows for the following version of the Graph Minors Structure Theorem (GMST)…

In this paper, the author (1) compares subnormal closures of finite sets in free groups; (2) proves that the exponential growth rate (e.g.r.), i.e., the limit of the n-th roots of g(n), where g(n) is the growth function of a subgroup H with…

In knot concordance three genera arise naturally, g(K), g_4(K), and g_c(K): these are the classical genus, the 4-ball genus, and the concordance genus, defined to be the minimum genus among all knots concordant to K. Clearly 0 <= g_4(K) <=…

We study off-diagonal Ramsey numbers $r(H, K_n^{(k)})$ of $k$-uniform hypergraphs, where $H$ is a fixed linear $k$-uniform hypergraph and $K_n^{(k)}$ is complete on $n$ vertices. Recently, Conlon et al.\ disproved the folklore conjecture…

In this paper we examine the classes of graphs whose $K_n$-complements are trees and quasi-threshold graphs and derive formulas for their number of spanning trees; for a subgraph $H$ of $K_n$, the $K_n$-complement of $H$ is the graph…

The paper provides bounds for the ropelength of a link in terms of the crossing numbers of its split components. As in earlier papers, the bounds grow with the square of the crossing number; however, the constant involved is a substantial…

We consider the height of random k-trees and k-Apollonian networks. These random graphs are not really trees, but instead have a tree-like structure. The height will be the maximum distance of a vertex from the root. We show that w.h.p. the…

This article evolves an analytical theory of nonuniform $PN$-junctions by employing the transverse averaging technique (TAT) to reduce the three-dimensional semiconductor equations to the quasi-one-dimensional (quasi-1D) form involving all…