English
Related papers

Related papers: How often does the ratchet click? Facts, heuristic…

200 papers

Evolutionary analyses of large populations commonly incorporate stochasticity through temporal variation in selection while treating genetic transmission as fixed. Much less attention has been given to stochasticity in transmission itself.…

Populations and Evolution · Quantitative Biology 2026-02-24 Elisa Heinrich-Mora , Marcus Feldman

A model of the dynamics of natural rotifer populations is described as a discrete nonlinear map depending on three parameters, which reflect characteristics of the population and environment. Model dynamics and their change by variation of…

Subcellular Processes · Quantitative Biology 2007-05-23 Faina S. Berezovskaya , Georgy P. Karev , Terry W. Snell

In large asexual populations, multiple beneficial mutations arise in the population, compete, interfere with each other, and accumulate on the same genome, before any of them fix. The resulting dynamics, although studied by many authors, is…

Populations and Evolution · Quantitative Biology 2015-06-11 Daniel S. Fisher

The delay time distribution of neutron star mergers provides critical insights into binary evolution processes and the merger rate evolution of compact object binaries. However, current observational constraints on this delay time…

High Energy Astrophysical Phenomena · Physics 2022-11-28 Michael Zevin , Anya E. Nugent , Susmita Adhikari , Wen-fai Fong , Daniel E. Holz , Luke Zoltan Kelley

We have analyzed the relations between the mutational pressure, recombination and selection pressure in the bit-string model with sexual reproduction. For specific sets of these parameters we have found three phase transitions with one…

Populations and Evolution · Quantitative Biology 2007-05-23 D. Stauffer , S. Cebrat

We study a continuous-time dynamical system that models the evolving distribution of genotypes in an infinite population where genomes may have infinitely many or even a continuum of loci, mutations accumulate along lineages without…

Populations and Evolution · Quantitative Biology 2009-02-03 Aubrey Clayton , Steven N. Evans

Stochastic dynamics of a quantum system driven by $N$ statistically independent random sudden quenches in a fixed time interval is studied. We reveal that with growing $N$ the system approaches a deterministic limit indicating…

Quantum Physics · Physics 2018-08-15 Marcin Łobejko , Jerzy Dajka , Jerzy Łuczka

In this review some simple models of asexual populations evolving on smooth landscapes are studied. The basic model is based on a cellular automaton, which is analyzed here in the spatial mean-field limit. Firstly, the evolution on a fixed…

Statistical Mechanics · Physics 2016-11-23 Franco Bagnoli , Michele Bezzi

We give a closed form of the discrete-time evolution of a recombination transformation in population genetics. This decomposition allows to define a Markov chain in a natural way. We describe the geometric decay rate to the limit…

Probability · Mathematics 2016-03-24 Servet Martinez

We consider a stochastic model of population dynamics where each individual is characterised by a trait in {0,1,...,L} and has a natural reproduction rate, a logistic death rate due to age or competition and a probability of mutation…

Probability · Mathematics 2019-02-12 Anton Bovier , Loren Coquille , Charline Smadi

We consider an exactly solvable model of branching random walk with random selection, which describes the evolution of a population with $N$ individuals on the real line. At each time step, every individual reproduces independently, and its…

Probability · Mathematics 2018-10-09 Aser Cortines , Bastien Mallein

Here we study how mutations which change physical properties of cell proteins (stability) impact population survival and growth. In our model the genotype is presented as a set of N numbers, folding free energies of cells N proteins.…

Biomolecules · Quantitative Biology 2009-03-10 Peiqiu Chen , Eugene I. Shakhnovich

We investigate the competition between barrier slowing down and proliferation induced superdiffusion in a model of population dynamics in a random force field. Numerical results in $d=1$ suggest that a new intermediate diffusion behaviour…

Condensed Matter · Physics 2007-05-23 Irene Giardina , Jean-Philippe Bouchaud , Marc Mezard

We propose and analyze a self-adaptive version of the $(1,\lambda)$ evolutionary algorithm in which the current mutation rate is part of the individual and thus also subject to mutation. A rigorous runtime analysis on the OneMax benchmark…

Neural and Evolutionary Computing · Computer Science 2018-12-03 Benjamin Doerr , Carsten Witt , Jing Yang

Resource are often not uniformly distributed within a population. Spatial variations of concentration of a resource, change the fitness of competing strategies locally. The notion of fitness varying with respect to both genotype and…

Populations and Evolution · Quantitative Biology 2022-04-08 Hossein Nemati , Mohammad Reza Ejtehadi , Kamran Kaveh

We apply a common measure of randomness, the entropy, in the context of iterated functions on a finite set with n elements. For a permutation, it turns out that this entropy is asymptotically (for a growing number of iterations) close to…

Number Theory · Mathematics 2017-12-20 Joachim von zur Gathen

Given a discrete spatial structure $X$, we define continuous-time branching processes that model a population breeding and dying on $X$. These processes are usually called branching random walks. They are characterized by breeding rates…

Probability · Mathematics 2025-09-03 Daniela Bertacchi , Fabio Zucca

Motivated by models of cancer formation in which cells need to acquire $k$ mutations to become cancerous, we consider a spatial population model in which the population is represented by the $d$-dimensional torus of side length $L$.…

Probability · Mathematics 2020-01-07 Jasmine Foo , Kevin Leder , Jason Schweinsberg

When studying the dynamics of trait distribution of populations in a heterogeneous environment, classical models from quantitative genetics choose to look at its system of moments, specifically the first two ones. Additionally, in order to…

Populations and Evolution · Quantitative Biology 2020-12-21 Léonard Dekens

We introduce and study the writhe of a permutation, a circular variant of the well-known inversion number. This simple permutation statistics has several interpretations, which lead to some interesting properties. For a permutation sampled…

Combinatorics · Mathematics 2017-11-30 Chaim Even-Zohar