English

Traveling waves of selective sweeps

Probability 2015-03-13 v4

Abstract

The goal of cancer genome sequencing projects is to determine the genetic alterations that cause common cancers. Many malignancies arise during the clonal expansion of a benign tumor which motivates the study of recurrent selective sweeps in an exponentially growing population. To better understand this process, Beerenwinkel et al. [PLoS Comput. Biol. 3 (2007) 2239--2246] consider a Wright--Fisher model in which cells from an exponentially growing population accumulate advantageous mutations. Simulations show a traveling wave in which the time of the first kk-fold mutant, TkT_k, is approximately linear in kk and heuristics are used to obtain formulas for ETkET_k. Here, we consider the analogous problem for the Moran model and prove that as the mutation rate μ0\mu\to0, Tkcklog(1/μ)T_k\sim c_k\log(1/\mu), where the ckc_k can be computed explicitly. In addition, we derive a limiting result on a log scale for the size of Xk(t)=X_k(t)={}the number of cells with kk mutations at time tt.

Keywords

Cite

@article{arxiv.0910.5730,
  title  = {Traveling waves of selective sweeps},
  author = {Rick Durrett and John Mayberry},
  journal= {arXiv preprint arXiv:0910.5730},
  year   = {2015}
}

Comments

Published in at http://dx.doi.org/10.1214/10-AAP721 the Annals of Applied Probability (http://www.imstat.org/aap/) by the Institute of Mathematical Statistics (http://www.imstat.org)