English

Temperature 1 Self-Assembly: Deterministic Assembly in 3D and Probabilistic Assembly in 2D

Computational Complexity 2015-03-13 v2 Discrete Mathematics

Abstract

We investigate the power of the Wang tile self-assembly model at temperature 1, a threshold value that permits attachment between any two tiles that share even a single bond. When restricted to deterministic assembly in the plane, no temperature 1 assembly system has been shown to build a shape with a tile complexity smaller than the diameter of the shape. In contrast, we show that temperature 1 self-assembly in 3 dimensions, even when growth is restricted to at most 1 step into the third dimension, is capable of simulating a large class of temperature 2 systems, in turn permitting the simulation of arbitrary Turing machines and the assembly of n×nn\times n squares in near optimal O(logn)O(\log n) tile complexity. Further, we consider temperature 1 probabilistic assembly in 2D, and show that with a logarithmic scale up of tile complexity and shape scale, the same general class of temperature τ=2\tau=2 systems can be simulated with high probability, yielding Turing machine simulation and O(log2n)O(\log^2 n) assembly of n×nn\times n squares with high probability. Our results show a sharp contrast in achievable tile complexity at temperature 1 if either growth into the third dimension or a small probability of error are permitted. Motivated by applications in nanotechnology and molecular computing, and the plausibility of implementing 3 dimensional self-assembly systems, our techniques may provide the needed power of temperature 2 systems, while at the same time avoiding the experimental challenges faced by those systems.

Keywords

Cite

@article{arxiv.0912.0027,
  title  = {Temperature 1 Self-Assembly: Deterministic Assembly in 3D and Probabilistic Assembly in 2D},
  author = {Matthew Cook and Yunhui Fu and Robert T. Schweller},
  journal= {arXiv preprint arXiv:0912.0027},
  year   = {2015}
}
R2 v1 2026-06-21T14:17:56.552Z