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Working in a three-dimensional variant of Winfree's abstract Tile Assembly Model, we show that, for all $N \in \mathbb{N}$, there is a tile set that uniquely self-assembles into an $N \times N$ square shape at temperature 1 with optimal…

Computational Geometry · Computer Science 2014-11-06 David Furcy , Samuel Micka , Scott M. Summers

The field of algorithmic self-assembly is concerned with the computational and expressive power of nanoscale self-assembling molecular systems. In the well-studied cooperative, or temperature 2, abstract tile assembly model it is known that…

Computational Complexity · Computer Science 2017-05-31 Pierre-Étienne Meunier , Damien Woods

Working in a three-dimensional variant of Winfree's abstract Tile Assembly Model, we show that, for an arbitrary finite, connected shape $X \subset \mathbb{Z}^2$, there is a tile set that uniquely self-assembles into a 3D representation of…

Computational Geometry · Computer Science 2015-07-24 David Furcy , Scott M. Summers

We prove a negative result on the power of a model of algorithmic self-assembly for which it has been notoriously difficult to find general techniques and results. Specifically, we prove that Winfree's abstract Tile Assembly Model, when…

Computational Complexity · Computer Science 2013-04-11 Pierre-Étienne Meunier , Matthew J. Patitz , Scott M. Summers , Guillaume Theyssier , Andrew Winslow , Damien Woods

We prove that if a subset X of the integer Cartesian plane weakly self-assembles at temperature 1 in a deterministic (Winfree) tile assembly system satisfying a natural condition known as *pumpability*, then X is a finite union of doubly…

Computational Complexity · Computer Science 2009-06-18 David Doty , Matthew J. Patitz , Scott M. Summers

We prove that if a set $X \subseteq \Z^2$ weakly self-assembles at temperature 1 in a deterministic tile assembly system satisfying a natural condition known as \emph{pumpability}, then $X$ is a finite union of semi-doubly periodic sets.…

Discrete Mathematics · Computer Science 2009-03-12 David Doty , Matthew J Patitz , Scott M Summers

We consider non cooperative binding in so called `temperature 1', in deterministic (here called {\it confluent}) tile self-assembly systems (1-TAS) and prove the standing conjecture that such systems do not have universal computational…

Computational Complexity · Computer Science 2019-01-25 Jérôme Durand-Lose , Hendrik Jan Hoogeboom , Nataša Jonoska

We investigate a fundamental question regarding a benchmark class of shapes in one of the simplest, yet most widely utilized abstract models of algorithmic tile self-assembly. Specifically, we study the directed tile complexity of a $k…

Data Structures and Algorithms · Computer Science 2020-07-23 David Furcy , Scott M. Summers , Logan Withers

This paper concerns the self-assembly of scaled-up versions of arbitrary finite shapes. We work in the multiple temperature model that was introduced by Aggarwal, Cheng, Goldwasser, Kao, and Schweller (Complexities for Generalized Models of…

Computational Complexity · Computer Science 2009-09-30 Scott M. Summers

In this paper, we study the minimum number of unique tile types required for the self-assembly of thin rectangles in Winfree's abstract Tile Assembly Model (aTAM), restricted to temperature-1. Using Catalan numbers, planar self-assembly and…

Computational Geometry · Computer Science 2019-06-18 David Furcy , Scott M. Summers , Christian Wendlandt

We show the first asymptotically efficient constructions in the so-called "noncooperative planar tile assembly" model. Algorithmic self-assembly is the study of the local, distributed, asynchronous algorithms ran by molecules to…

Computational Complexity · Computer Science 2021-07-19 Pierre-Etienne Meunier , Damien Regnault

In this paper, we extend existing results about simulation and intrinsic universality in a model of tile-based self-assembly. Namely, we work within the 2-Handed Assembly Model (2HAM), which is a model of self-assembly in which assemblies…

Computational Geometry · Computer Science 2015-03-17 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

We show here that a model called directed self-assembly at temperature 1 is unable to do complex computations like the ones of a Turing machine. Since this model can be seen as a generalization of finite automata to 2D languages, a logical…

Computational Complexity · Computer Science 2020-11-20 Pierre-Étienne Meunier , Damien Regnault

We consider the tile self-assembly model and how tile complexity can be eliminated by permitting the temperature of the self-assembly system to be adjusted throughout the assembly process. To do this, we propose novel techniques for…

Computational Complexity · Computer Science 2007-05-23 Ming-Yang Kao , Robert Schweller

In this paper, we work in a 2D version of the probabilistic variant of Winfree's abstract Tile Assembly Model defined by Chandran, Gopalkrishnan and Reif (SICOMP 2012) in which attaching tiles are sampled uniformly with replacement. First,…

Data Structures and Algorithms · Computer Science 2024-08-13 David Furcy , Scott M. Summers

Is Winfree's abstract Tile Assembly Model (aTAM) "powerful?" Well, if certain tiles are required to "cooperate" in order to be able to bind to a growing tile assembly (a.k.a., temperature 2 self-assembly), then Turing universal computation…

Emerging Technologies · Computer Science 2012-02-02 Matthew J. Patitz , Robert T. Schweller , Scott M. Summers

We prove a Pumping Lemma for the noncooperative abstract Tile Assembly Model, a model central to the theory of algorithmic self-assembly since the beginning of the field. This theory suggests, and our result proves, that small differences…

Computational Complexity · Computer Science 2020-02-11 Pierre-Étienne Meunier , Damien Regnault , Damien Woods

In the abstract Tile Assembly Model (aTAM), the phenomenon of cooperation occurs when the attachment of a new tile to a growing assembly requires it to bind to more than one tile already in the assembly. Often referred to as…

Emerging Technologies · Computer Science 2014-03-18 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

We consider non-cooperative binding, so-called 'temperature 1', in deterministic or directed (called here confluent) tile self-assembly systems in two dimensions and show a necessary and sufficient condition for such system to have an…

Computational Complexity · Computer Science 2022-02-11 Jérôme Durand-Lose , Hendrik Jan Hoogeboom , Nataša Jonoska

In this paper we explore the power of geometry to overcome the limitations of non-cooperative self-assembly. We define a generalization of the abstract Tile Assembly Model (aTAM), such that a tile system consists of a collection of…

Emerging Technologies · Computer Science 2014-08-20 Sándor P. Fekete , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers , Robert T. Schweller
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