Protein folding as a jamming transition
Soft Condensed Matter
2025-03-28 v1 Biological Physics
Abstract
Proteins fold to a specific functional conformation with a densely packed hydrophobic core that controls their stability. We develop a geometric, yet all-atom model for proteins that explains the universal core packing fraction of found in experimental measurements. We show that as the hydrophobic interactions increase relative to the temperature, a novel jamming transition occurs when the core packing fraction exceeds . The model also recapitulates the global structure of proteins since it can accurately refold to native-like structures from partially unfolded states.
Cite
@article{arxiv.2405.09646,
title = {Protein folding as a jamming transition},
author = {Alex T. Grigas and Zhuoyi Liu and Jack A. Logan and Mark D. Shattuck and Corey S. O'Hern},
journal= {arXiv preprint arXiv:2405.09646},
year = {2025}
}
Comments
5 pages, 4 figures