Polymer Translocation out of Planar Confinements
Abstract
Polymer translocation in three dimensions out of planar confinements is studied in this paper. Three membranes are located at , and . These membranes are impenetrable, except for the middle one at , which has a narrow pore. A polymer with length is initially sandwiched between the membranes placed at and and translocates through this pore. We consider strong confinement (small ), where the polymer is essentially reduced to a two-dimensional polymer, with a radius of gyration scaling as ; here, is the Flory exponent in two dimensions. The polymer performs Rouse dynamics. Based on theoretical analysis and high-precision simulation data, we show that in the unbiased case , the dwell-time scales as , in perfect agreement with our previously published theoretical framework. For , the situation is equivalent to field-driven translocation in two dimensions. We show that in this case scales as , in agreement with several existing numerical results in the literature. This result violates the earlier reported lower bound for for field-driven translocation. We argue, based on energy conservation, that the actual lower bound for is and not . Polymer translocation in such theoretically motivated geometries thus resolves some of the most fundamental issues that are the subjects of much heated debate in recent times.
Keywords
Cite
@article{arxiv.0710.0147,
title = {Polymer Translocation out of Planar Confinements},
author = {Debabrata Panja and Gerard T. Barkema and Robin C. Ball},
journal= {arXiv preprint arXiv:0710.0147},
year = {2008}
}
Comments
Minor changes; 18+ pages, 8 figures, 5 tables, to appear in J. Phys: Cond. Mat