English

Polymer Translocation out of Planar Confinements

Soft Condensed Matter 2008-01-29 v2 Statistical Mechanics

Abstract

Polymer translocation in three dimensions out of planar confinements is studied in this paper. Three membranes are located at z=hz=-h, z=0z=0 and z=h1z=h_1. These membranes are impenetrable, except for the middle one at z=0z=0, which has a narrow pore. A polymer with length NN is initially sandwiched between the membranes placed at z=hz=-h and z=0z=0 and translocates through this pore. We consider strong confinement (small hh), where the polymer is essentially reduced to a two-dimensional polymer, with a radius of gyration scaling as Rg\tinytext(2D)Nν\tinytext2DR^{\tinytext{(2D)}}_g \sim N^{\nu_{\tinytext{2D}}}; here, ν\tinytext2D=0.75\nu_{\tinytext{2D}}=0.75 is the Flory exponent in two dimensions. The polymer performs Rouse dynamics. Based on theoretical analysis and high-precision simulation data, we show that in the unbiased case h=h1h=h_1, the dwell-time τd\tau_d scales as N2+ν\tinytext2DN^{2+\nu_{\tinytext{2D}}}, in perfect agreement with our previously published theoretical framework. For h1=h_1=\infty, the situation is equivalent to field-driven translocation in two dimensions. We show that in this case τd\tau_d scales as N2ν\tinytext2DN^{2\nu_{\tinytext{2D}}}, in agreement with several existing numerical results in the literature. This result violates the earlier reported lower bound N1+νN^{1+\nu} for τd\tau_d for field-driven translocation. We argue, based on energy conservation, that the actual lower bound for τd\tau_d is N2νN^{2\nu} and not N1+νN^{1+\nu}. Polymer translocation in such theoretically motivated geometries thus resolves some of the most fundamental issues that are the subjects of much heated debate in recent times.

Keywords

Cite

@article{arxiv.0710.0147,
  title  = {Polymer Translocation out of Planar Confinements},
  author = {Debabrata Panja and Gerard T. Barkema and Robin C. Ball},
  journal= {arXiv preprint arXiv:0710.0147},
  year   = {2008}
}

Comments

Minor changes; 18+ pages, 8 figures, 5 tables, to appear in J. Phys: Cond. Mat