English

Passage Times for Polymer Translocation Pulled through a Narrow Pore

Soft Condensed Matter 2008-02-14 v3 Statistical Mechanics Biological Physics Biomolecules

Abstract

We study the passage times of a translocating polymer of length NN in three dimensions, while it is pulled through a narrow pore with a constant force FF applied to one end of the polymer. At small to moderate forces, satisfying the condition FNν/kBT1FN^{\nu}/k_BT\lesssim1, where ν0.588\nu\approx0.588 is the Flory exponent for the polymer, we find that τN\tau_N, the mean time the polymer takes to leave the pore, scales as N2+νN^{2+\nu} independent of FF, in agreement with our earlier result for F=0. At strong forces, i.e., for FNν/kBT1FN^{\nu}/k_BT\gg1, the behaviour of the passage time crosses over to τNN2/F\tau_N\sim N^2/F. We show here that these behaviours stem from the polymer dynamics at the immediate vicinity of the pore -- in particular, the memory effects in the polymer chain tension imbalance across the pore.

Keywords

Cite

@article{arxiv.0706.3969,
  title  = {Passage Times for Polymer Translocation Pulled through a Narrow Pore},
  author = {Debabrata Panja and Gerard T. Barkema},
  journal= {arXiv preprint arXiv:0706.3969},
  year   = {2008}
}
R2 v1 2026-06-21T08:42:29.612Z