English

On the existence of a cherry-picking sequence

Populations and Evolution 2021-04-13 v1 Data Structures and Algorithms

Abstract

Recently, the minimum number of reticulation events that is required to simultaneously embed a collection P of rooted binary phylogenetic trees into a so-called temporal network has been characterized in terms of cherry-picking sequences. Such a sequence is a particular ordering on the leaves of the trees in P. However, it is well-known that not all collections of phylogenetic trees have a cherry-picking sequence. In this paper, we show that the problem of deciding whether or not P has a cherry-picking sequence is NP-complete for when P contains at least eight rooted binary phylogenetic trees. Moreover, we use automata theory to show that the problem can be solved in polynomial time if the number of trees in P and the number of cherries in each such tree are bounded by a constant.

Keywords

Cite

@article{arxiv.1712.04127,
  title  = {On the existence of a cherry-picking sequence},
  author = {Janosch Döcker and Simone Linz},
  journal= {arXiv preprint arXiv:1712.04127},
  year   = {2021}
}

Comments

Accepted for publication in Theoretical Computer Science

R2 v1 2026-06-22T23:15:09.249Z