On Critical Relative Distance of DNA Codes for Additive Stem Similarity
Information Theory
2016-11-17 v1 math.IT
Biomolecules
Genomics
Abstract
We consider DNA codes based on the nearest-neighbor (stem) similarity model which adequately reflects the "hybridization potential" of two DNA sequences. Our aim is to present a survey of bounds on the rate of DNA codes with respect to a thermodynamically motivated similarity measure called an additive stem similarity. These results yield a method to analyze and compare known samples of the nearest neighbor "thermodynamic weights" associated to stacked pairs that occurred in DNA secondary structures.
Keywords
Cite
@article{arxiv.1001.1278,
title = {On Critical Relative Distance of DNA Codes for Additive Stem Similarity},
author = {A. D'yachkov and A. Voronina and A. Macula and T. Renz and V. Rykov},
journal= {arXiv preprint arXiv:1001.1278},
year = {2016}
}
Comments
5 or 6 pages (compiler-dependable), 0 figures, submitted to 2010 IEEE International Symposium on Information Theory (ISIT 2010), uses IEEEtran.cls