Folding, Design and Determination of Interaction Potentials Using Off-Lattice Dynamics of Model Heteropolymers
Statistical Mechanics
2009-10-31 v1 Soft Condensed Matter
q-bio
Abstract
We present the results of a self-consistent, unified molecular dynamics study of simple model heteropolymers in the continuum with emphasis on folding, sequence design and the determination of the interaction parameters of the effective potential between the amino acids from the knowledge of the native states of the designed sequences.
Keywords
Cite
@article{arxiv.cond-mat/9802269,
title = {Folding, Design and Determination of Interaction Potentials Using Off-Lattice Dynamics of Model Heteropolymers},
author = {Cecilia Clementi and Amos Maritan and Jayanth R. Banavar},
journal= {arXiv preprint arXiv:cond-mat/9802269},
year = {2009}
}
Comments
8 pages, 3 Postscript figures, uses RevTeX. Submitted to Physical Review Letters