English

Highly Designable Protein Structures and Inter Monomer Interactions

Soft Condensed Matter 2009-10-30 v1 q-bio

Abstract

By exact computer enumeration and combinatorial methods, we have calculated the designability of proteins in a simple lattice H-P model for the protein folding problem. We show that if the strength of the non-additive part of the interaction potential becomes larger than a critical value, the degree of designability of structures will depend on the parameters of potential. We also show that the existence of a unique ground state is highly sensitive to mutation in certain sites.

Keywords

Cite

@article{arxiv.cond-mat/9710028,
  title  = {Highly Designable Protein Structures and Inter Monomer Interactions},
  author = {M. R. Ejtehadi and N. Hamedani and H. Seyed-Allaei and V. Shahrezaei and M. Yahyanejad},
  journal= {arXiv preprint arXiv:cond-mat/9710028},
  year   = {2009}
}

Comments

14 pages, Latex file, 3 latex and 6 eps figures are included