English

Efficient designs for threshold group testing without gap

Information Theory 2024-05-10 v1 math.IT

Abstract

Given dd defective items in a population of nn items with dnd \ll n, in threshold group testing without gap, the outcome of a test on a subset of items is positive if the subset has at least uu defective items and negative otherwise, where 1ud1 \leq u \leq d. The basic goal of threshold group testing is to quickly identify the defective items via a small number of tests. In non-adaptive design, all tests are designed independently and can be performed in parallel. The decoding time in the non-adaptive state-of-the-art work is a polynomial of (d/u)u(d/(du))du,d(d/u)^u (d/(d-u))^{d - u}, d, and logn\log{n}. In this work, we present a novel design that significantly reduces the number of tests and the decoding time to polynomials of min{uu,(du)du},d\min\{u^u, (d - u)^{d - u}\}, d, and logn\log{n}. In particular, when uu is a constant, the number of tests and the decoding time are O(d3(log2n)log(n/d))O(d^3 (\log^2{n}) \log{(n/d)} ) and O(d3(log2n)log(n/d)+d2(logn)log3(n/d))O\big(d^3 (\log^2{n}) \log{(n/d)} + d^2 (\log{n}) \log^3{(n/d)} \big), respectively. For a special case when u=2u = 2, with non-adaptive design, the number of tests and the decoding time are O(d3(logn)log(n/d))O(d^3 (\log{n}) \log{(n/d)} ) and O(d2(logn+log2(n/d)))O(d^2 (\log{n} + \log^2{(n/d)}) ), respectively. Moreover, with 2-stage design, the number of tests and the decoding time are O(d2log2(n/d))O(d^2 \log^2{(n/d)} ).

Keywords

Cite

@article{arxiv.2405.05827,
  title  = {Efficient designs for threshold group testing without gap},
  author = {Thach V. Bui and Yeow Meng Chee and Van Khu Vu},
  journal= {arXiv preprint arXiv:2405.05827},
  year   = {2024}
}

Comments

11 pages, 2 figures