English

Counting Phylogenetic Networks with Few Reticulation Vertices: A Second Approach

Combinatorics 2022-03-22 v3

Abstract

Tree-child networks, one of the prominent network classes in phylogenetics, have been introduced for the purpose of modeling reticulate evolution. Recently, the first author together with Gittenberger and Mansouri (2019) showed that the number TC,k{\rm TC}_{\ell,k} of tree-child networks with \ell leaves and kk reticulation vertices has the first-order asymptotics TC,kck(2e)+2k1,(). {\rm TC}_{\ell,k}\sim c_k\left(\frac{2}{e}\right)^{\ell}\ell^{\ell+2k-1},\qquad (\ell\rightarrow\infty). Moreover, they also computed ckc_k for k=1,2,k=1,2, and 33. In this short note, we give a second approach to the above result which is based on a recent (algorithmic) approach for the counting of tree-child networks due to Cardona and Zhang (2020). This second approach is also capable of giving a simple, closed-form expression for ckc_k, namely, ck=2k12/k!c_k=2^{k-1}\sqrt{2}/k! for all k0k\geq 0.

Keywords

Cite

@article{arxiv.2104.07842,
  title  = {Counting Phylogenetic Networks with Few Reticulation Vertices: A Second Approach},
  author = {Michael Fuchs and En-Yu Huang and Guan-Ru Yu},
  journal= {arXiv preprint arXiv:2104.07842},
  year   = {2022}
}

Comments

accepted version, 13 pages

R2 v1 2026-06-24T01:13:35.900Z