English

Enumerative and Distributional Results for $d$-combining Tree-Child Networks

Combinatorics 2024-03-26 v2

Abstract

Tree-child networks are one of the most prominent network classes for modeling evolutionary processes which contain reticulation events. Several recent studies have addressed counting questions for bicombining tree-child networks in which every reticulation node has exactly two parents. We extend these studies to dd-combining tree-child networks where every reticulation node has now d2d\geq 2 parents, and we study one-component as well as general tree-child networks. For the number of one-component networks, we derive an exact formula from which asymptotic results follow that contain a stretched exponential for d=2d=2, yet not for d3d \geq 3. For general networks, we find a novel encoding by words which leads to a recurrence for their numbers. From this recurrence, we derive asymptotic results which show the appearance of a stretched exponential for all d2d \geq 2. Moreover, we also give results on the distribution of shape parameters (e.g., number of reticulation nodes, Sackin index) of a network which is drawn uniformly at random from the set of all tree-child networks with the same number of leaves. We show phase transitions depending on dd, leading to normal, Bessel, Poisson, and degenerate distributions. Some of our results are new even in the bicombining case.

Keywords

Cite

@article{arxiv.2209.03850,
  title  = {Enumerative and Distributional Results for $d$-combining Tree-Child Networks},
  author = {Yu-Sheng Chang and Michael Fuchs and Hexuan Liu and Michael Wallner and Guan-Ru Yu},
  journal= {arXiv preprint arXiv:2209.03850},
  year   = {2024}
}

Comments

Revised version; accepted for publication in Adv. in Appl. Math