New alphabet-dependent morphological transition in a random RNA alignment
Abstract
We study the fraction of nucleotides involved in the formation of a cactus--like secondary structure of random heteropolymer RNA--like molecules. In the low--temperature limit we study this fraction as a function of the number of different nucleotide species. We show, that with changing , the secondary structures of random RNAs undergo a morphological transition: for as the chain length goes to infinity, signaling the formation of a virtually "perfect" gapless secondary structure; while for , what means that a non-perfect structure with gaps is formed. The strict upper and lower bounds are proven, and the numerical evidence for is presented. The relevance of the transition from the evolutional point of view is discussed.
Keywords
Cite
@article{arxiv.1109.5410,
title = {New alphabet-dependent morphological transition in a random RNA alignment},
author = {O. V. Valba and M. V. Tamm and S. K. Nechaev},
journal= {arXiv preprint arXiv:1109.5410},
year = {2013}
}
Comments
4 pages, 3 figures (title is changed, text is essentially reworked), accepted in PRL