English

New phase transition in random planar diagrams and RNA-type matching

Statistical Mechanics 2015-06-16 v2 Biomolecules

Abstract

We study the planar matching problem, defined by a symmetric random matrix with independent identically distributed entries, taking values 0 and 1. We show that the existence of a perfect planar matching structure is possible only above a certain critical density, pcp_{c}, of allowed contacts (i.e. of '1'). Using a formulation of the problem in terms of Dyck paths and a matrix model of planar contact structures, we provide an analytical estimation for the value of the transition point, pcp_{c}, in the thermodynamic limit. This estimation is close to the critical value, pc0.379p_{c} \approx 0.379, obtained in numerical simulations based on an exact dynamical programming algorithm. We characterize the corresponding critical behavior of the model and discuss the relation of the perfect-imperfect matching transition to the known molten-glass transition in the context of random RNA secondary structure's formation. In particular, we provide strong evidence supporting the conjecture that the molten-glass transition at T=0 occurs at pcp_{c}.

Keywords

Cite

@article{arxiv.1307.2170,
  title  = {New phase transition in random planar diagrams and RNA-type matching},
  author = {Andrey Y. Lokhov and Sergei K. Nechaev and Mikhail V. Tamm and Olga V. Valba},
  journal= {arXiv preprint arXiv:1307.2170},
  year   = {2015}
}

Comments

8 pages, 6 figures (we have added the new fig.4)