English

Generating Normal Networks via Leaf Insertion and Nearest Neighbor Interchange

Populations and Evolution 2019-08-05 v3 Data Structures and Algorithms Combinatorics

Abstract

Galled trees are studied as a recombination model in theoretic population genetics. This class of phylogenetic networks has been generalized to tree-child networks, normal networks and tree-based networks by relaxing a structural condition. Although these networks are simple, their topological structures have yet to be fully understood. It is well-known that all phylogenetic trees on nn taxa can be generated by the insertion of the nn-th taxa to each edge of all the phylogenetic trees on n1n-1 taxa. We prove that all tree-child networks with kk reticulate nodes on nn taxa can be uniquely generated via three operations from all the tree-child networks with k1k-1 or kk reticulate nodes on n1n-1 taxa . An application of this result is found in counting tree-child networks and normal networks. In particular, a simple formula is given for the number of rooted phylogenetic networks with one reticulate node.

Keywords

Cite

@article{arxiv.1906.12053,
  title  = {Generating Normal Networks via Leaf Insertion and Nearest Neighbor Interchange},
  author = {Louxin Zhang},
  journal= {arXiv preprint arXiv:1906.12053},
  year   = {2019}
}

Comments

4 figures and 13 pages

R2 v1 2026-06-23T10:06:23.165Z