English

CEST MR fingerprinting (CEST-MRF) for Brain Tumor Quantification Using EPI Readout and Deep Learning Reconstruction

Medical Physics 2024-07-17 v2 Image and Video Processing

Abstract

Purpose\textbf{Purpose}: To develop a clinical CEST MR fingerprinting (CEST-MRF) method for brain tumor quantification using EPI acquisition and deep learning reconstruction. Methods\textbf{Methods}: A CEST-MRF pulse sequence originally designed for animal imaging was modified to conform to hardware limits on clinical scanners while keeping scan time \leq 2 minutes. Quantitative MRF reconstruction was performed using a deep reconstruction network (DRONE) to yield the water relaxation and chemical exchange parameters. The feasibility of the 6 parameter DRONE reconstruction was tested in simulations in a digital brain phantom. A healthy subject was scanned with the CEST-MRF sequence, conventional MRF and CEST sequences for comparison. Reproducibility was assessed via test-retest experiments and the concordance correlation coefficient (CCC) calculated for white matter (WM) and grey matter (GM). The clinical utility of CEST-MRF was demonstrated in 4 patients with brain metastases in comparison to standard clinical imaging sequences. Tumors were segmented into edema, solid core and necrotic core regions and the CEST-MRF values compared to the contra-lateral side. Results\textbf{Results}: The DRONE reconstruction of the digital phantom yielded a normalized RMS error of \leq 7% for all parameters. The CEST-MRF parameters were in good agreement with those from conventional MRF and CEST sequences and previous studies. The mean CCC for all 6 parameters was 0.98±\pm0.01 in WM and 0.98±\pm0.02 in GM. The CEST-MRF values in nearly all tumor regions were significantly different (P=0.05) from each other and the contra-lateral side. Conclusion\textbf{Conclusion}: Combination of EPI readout and deep learning reconstruction enabled fast, accurate and reproducible CEST-MRF in brain tumors.

Keywords

Cite

@article{arxiv.2108.08333,
  title  = {CEST MR fingerprinting (CEST-MRF) for Brain Tumor Quantification Using EPI Readout and Deep Learning Reconstruction},
  author = {Ouri Cohen and Victoria Y. Yu and Kathryn R. Tringale and Robert J. Young and Or Perlman and Christian T. Farrar and Ricardo Otazo},
  journal= {arXiv preprint arXiv:2108.08333},
  year   = {2024}
}

Comments

9 figures, 1 table

R2 v1 2026-06-24T05:13:55.577Z