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Caffeine (CAF) is one of the most widely and regularly consumed biologically active substances. We use computer simulation approach to the study of CAF activity by searching for its possible complexes with biopolymer fragments. The…

Biomolecules · Quantitative Biology 2015-08-27 V. I. Poltev , E. Rodriguez , T. I. Grokhlina , A. V. Teplukhin , A. Deriabina , E. Gonzalez

Constructing physical models of living cells and tissues is an extremely challenging task because of the high complexities of both intra- and intercellular processes. In addition, the force that a single cell generates vanishes in total due…

Soft Condensed Matter · Physics 2019-05-09 Mitsusuke Tarama , Kenji Mori , Ryoichi Yamamoto

Recently, the celebrated Keldysh potential has been widely used to describe the Coulomb interaction of few-body complexes in monolayer transition-metal dichalcogenides. Using this potential to model charged excitons (trions), one finds a…

Materials Science · Physics 2018-10-03 Dinh Van Tuan , Min Yang , Hanan Dery

We propose a local, O(N) molecular dynamics algorithm for the simulation of charged systems. The long ranged Coulomb potential is generated by a propagating electric field that obeys modified Maxwell equations. On coupling the…

Soft Condensed Matter · Physics 2009-11-10 Jörg Rottler , A. C. Maggs

We introduce a distinctive feature of spin-polarized transport, the Spin Coulomb Drag: there is an intrinsic source of friction for spin currents due to the Coulomb interaction between spin ``up'' and spin ``down'' electrons. We calculate…

Strongly Correlated Electrons · Physics 2007-05-23 Irene D'Amico , Giovanni Vignale

A new form of the model collision operator for a Boltzmann gas of hard spheres and Coulomb plasma is derived. One-component and many-component systems are considered. The collision operator proposed takes properly into account the…

Statistical Mechanics · Physics 2014-09-23 Viacheslav V. Belyi

Friction is a complex phenomenon that is of paramount importance in everyday life. We present an easy-to-build and inexpensive experiment illustrating Coulomb's law of kinetic friction. The so-called friction, or Timoshenko, oscillator…

The cell cortex is a thin layer beneath the plasma membrane that gives animal cells mechanical resistance and drives most of their shape changes, from migration, division to multicellular morphogenesis. It is mainly composed of actin…

Biological Physics · Physics 2022-05-04 Hudson Borja da Rocha , Jérémy Bleyer , Hervé Turlier

We discover a new type of nonequilibrium phase transition in a model of chromatin dynamics, which accounts for the coherent motions that have been observed in experiment. The coherent motion is due to the long-range cooperation of molecular…

Soft Condensed Matter · Physics 2023-07-27 Iraj Eshghi , Alexanda Zidovska , Alexander Y. Grosberg

Actomyosin networks are major structural components of the cell. They provide mechanical integrity and allow dynamic remodeling of eukaryotic cells, self-organizing into the diverse patterns essential for development. We provide a…

Biological Physics · Physics 2012-04-17 Shenshen Wang , Peter G. Wolynes

The problem of Josephson current through Coulomb-blocked nanoscale superconductor-normal-superconductor structure with tunnel contacts is reconsidered. Two different contributions to the phase-biased supercurrent are identified, which are…

Mesoscale and Nanoscale Physics · Physics 2009-11-11 P. M. Ostrovsky , M. V. Feigel'man

We formulate and characterize a model to describe the dynamics of semiflexible polymers in the presence of activity due to motor proteins attached irreversibly to a substrate, and a transverse pulling force acting on one end of the…

Biological Physics · Physics 2016-02-12 Abhishek Chaudhuri , Debasish Chaudhuri

Within living cells, the transport of cargo is accomplished by groups of molecular motors. Such collective transport could utilize mechanisms which emerge from inter-motor interactions in ways that are yet to be fully understood. Here we…

Biomolecules · Quantitative Biology 2016-10-04 David Ando , Michelle K. Mattson , Jing Xu , Ajay Gopinathan

Negative differential resistance - a decrease in current with increasing bias voltage - is a counter-intuitive effect that is observed in various molecular junctions. Here, we present a novel mechanism that may be responsible for such an…

Mesoscale and Nanoscale Physics · Physics 2015-06-17 Yonatan Dubi

Microscopic biological systems operate far from equilibrium, are subject to strong fluctuations, and are composed of many coupled components with interactions varying in nature and strength. Researchers are actively investigating the…

Statistical Mechanics · Physics 2023-12-25 Emma Lathouwers , David A. Sivak

Self-assembly and force generation are two central processes in biological systems that usually are considered in separation. However, the signals that activate non-muscle myosin II molecular motors simultaneously lead to self-assembly into…

Biomolecules · Quantitative Biology 2020-02-12 Justin Grewe , Ulrich S. Schwarz

Coulomb drag is a transport phenomenon whereby long-range Coulomb interaction between charge carriers in two closely spaced but electrically isolated conductors induces a voltage (or, in a closed circuit, a current) in one of the conductors…

Mesoscale and Nanoscale Physics · Physics 2016-05-25 B. N. Narozhny , A. Levchenko

A magnet with precessing magnetization pumps a spin current into adjacent leads. As a special case of this spin pumping, a precessing macrospin (magnetization) can assist electrons in tunneling. In small systems, however, the Coulomb…

Mesoscale and Nanoscale Physics · Physics 2021-06-09 Tim Ludwig , Rembert A. Duine

This paper presents an analytical study about the behavior of arbitrary shaped and sized non-cohesive two-dimensional granular materials. Several mechanical properties and relations are unraveled by connecting micro and macro scales in an…

Geophysics · Physics 2013-02-06 Alex X. Jerves , José E. Andrade

The multinucleon transfer reactions near barrier energies has been investigated with a multistep model based on the dinuclear system (DNS) concept, in which the capture of two colliding nuclei, the transfer dynamics and the de-excitation…

Nuclear Theory · Physics 2018-01-03 Fei Niu , Peng-Hui Chen , Ya-Fei Guo , Chun-Wang Ma , Zhao-Qing Feng