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The function of proteins arises from cooperative interactions and rearrangements of their amino acids, which exhibit large-scale dynamical modes. Long-range correlations have also been revealed in protein sequences, and this has motivated…

Quantitative Methods · Quantitative Biology 2018-05-02 Sandipan Dutta , Jean-Pierre Eckmann , Albert Libchaber , Tsvi Tlusty

The Coulomb force, established in the rest frame of a source-charge $Q$, when transformed to a new frame moving with a velocity $\vec{V}$ has a form $\vec{F}= q\vec{{E}} + q\vec{v} \times \vec{{B}}$, where $\vec{{E}}=\vec{E}'_\parallel +…

Classical Physics · Physics 2016-08-11 Krzysztof Rębilas

While disproven by S. Carnot 200 years ago, corpuscularianism (the philosophy that the states of individual molecules determine the state of a system of those molecules) is still widely used to describe biological function. Nowhere is this…

Cell Behavior · Quantitative Biology 2025-06-11 Josh Baker

Tissue cells are in a state of permanent mechanical tension that is maintained mainly by myosin II minifilaments, which are bipolar assemblies of tens of myosin II molecular motors contracting actin networks and bundles. Here we introduce a…

Subcellular Processes · Quantitative Biology 2014-09-16 Philipp J. Albert , Thorsten Erdmann , Ulrich S. Schwarz

Recent experiments demonstrate that molecular motors from the Myosin II family serve as cross-links inducing active tension in the cytoskeletal network. Here we revise the Brownian ratchet model, previously studied in the context of active…

Biological Physics · Physics 2017-09-29 Pieter Baerts , Christian Maes , Jiří Pešek , Herman Ramon

Simulations of the kinetic friction due to a layer of adsorbed molecules between two crystalline surfaces are presented. The adsorbed layer naturally produces friction that is consistent with Amontons' laws and insensitive to parameters…

Materials Science · Physics 2007-05-23 Gang He , Mark O. Robbins

The bending of cilia and flagella is driven by forces generated by dynein motor proteins. These forces slide adjacent microtubule doublets within the axoneme, the motile cytoskeletal structure. To create regular, oscilla- tory beating…

Biological Physics · Physics 2015-06-19 V. Mukundan , P. Sartori , V. F. Geyer , F. Julicher , J. Howard

We consider an active-passive mechanical pair in which the relative motion of the latter is constrained by the mechanical impact. The system dynamics is described by the previously introduced modeling frameworks of force transition and…

Systems and Control · Electrical Eng. & Systems 2025-01-08 Michael Ruderman , Francesco De Rito

Low energy heavy-ion fusion reactions are governed by quantum tunneling through the Coulomb barrier formed by a strong cancellation of the repulsive Coulomb force with the attractive nuclear interaction between the colliding nuclei.…

Nuclear Theory · Physics 2013-01-03 K. Hagino , N. Takigawa

We review a family of models recently introduced to describe Brownian motors under the influence of Coulomb friction, or more general non-linear friction laws. It is known that, if the heat bath is modeled as the usual Langevin equation…

Statistical Mechanics · Physics 2014-09-25 Alessandro Manacorda , Andrea Puglisi , Alessandro Sarracino

Pattern formation and the mechanics of a mixture of actin filaments and myosin motors that is confined by a rigid membrane is investigated. By using a coarse-grained molecular dynamics model, we demonstrate that the competition between the…

Soft Condensed Matter · Physics 2023-04-12 Mitsusuke Tarama , Tatsuo Shibata

The mitotic spindle lies at the heart of the spatio-temporal control over cellular components during cell division. The spindle consists of microtubules, which are not only crosslinked by motor proteins but also by passive binding proteins.…

Biological Physics · Physics 2020-08-19 Harmen Wierenga , Pieter Rein ten Wolde

Herein, epoxy resin is cured by coupling quantum chemical (QC) calculations with molecular dynamics (MD) simulations that enable parameter-free prediction of material characteristics. A polymer network is formed by the reaction between base…

Amontons' law postulates a monotonic relationship between frictional force and the normal load applied to a sliding contact. This empirical rule, however, fails in systems where internal degrees of freedom - such as structural or electronic…

Materials Science · Physics 2026-03-19 Hongri Gu , Anton Lüders , Clemens Bechinger

The engineering of artificial systems hosting topological excitations is at the heart of current condensed matter research. Most of these efforts focus on single-particle properties neglecting possible engineering routes via the…

Strongly Correlated Electrons · Physics 2021-03-23 Malte Rösner , Jose L. Lado

Dynamics of molecular motor dimers, consisting of rigidly bound particles that move along two parallel lattices and interact with underlying molecular tracks, is investigated theoretically by analyzing discrete-state stochastic…

Statistical Mechanics · Physics 2009-11-13 Alexander Yu. Morozov , Anatoly B. Kolomeisky

Linear bio-molecular motors move unidirectionally along a track by coordinating several different processes, such as fuel (ATP) capture, hydrolysis, conformational changes, binding and unbinding from a track, and center-of-mass diffusion. A…

Statistical Mechanics · Physics 2015-05-18 Nathan J. Kuwada , Gerhard A. Blab , Heiner Linke

We show theoretically that near a fluid-fluid interface a single active colloidal particle generating, e.g., chemicals or a temperature gradient experiences an effective force of hydrodynamic origin. This force is due to the fluid flow…

Soft Condensed Matter · Physics 2016-03-16 Alvaro Domínguez , Paolo Malgaretti , Mihail N. Popescu , Siegfried Dietrich

A new approach to chemical bonding is introduced in order to provide an improved understanding of the connection between basic quantum mechanics and the covalent pair bond. It's focus is on the fact that the energy of the bond is largely…

Chemical Physics · Physics 2008-02-03 Holger F. Hofmann

The Coulomb interaction between the two protons is included in the calculation of proton-deuteron breakup and of three-body electromagnetic disintegration of ${}^3\mathrm{He}$. The hadron dynamics is based on the purely nucleonic…

Nuclear Theory · Physics 2014-11-18 A. Deltuva , A. C. Fonseca , P. U. Sauer
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