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Organic material in anoxic sediment represents a globally significant carbon reservoir that acts to stabilize Earth's atmospheric composition. The dynamics by which microbes organize to consume this material remain poorly understood. Here…

Biological Physics · Physics 2017-04-27 Alexander Petroff , Frank Tejera , Albert Libchaber

We study the spatial patterns formed by a system of interacting particles where the mobility of any individual is determined by the population crowding at two different spatial scales. In this way we model the behavior of some biological…

Statistical Mechanics · Physics 2015-07-08 Ricardo Martínez-García , Clara Murgui , Emilio Hernández-García , Cristóbal López

In open water, social fish gather to form schools, in which fish generally align with each other. In this work, we study how this social behavior evolves when perturbed by artificial obstacles. We measure the collective behavior of a group…

Biological Physics · Physics 2024-07-03 Bruno Ventéjou , Iris Magniez--Papillon , Eric Bertin , Philippe Peyla , Aurélie Dupont

Flocking is a paradigmatic example of collective animal behaviour, where decentralized interaction rules give rise to a globally ordered state. In the emergence of order out of self-organization we find similarities between biological…

Populations and Evolution · Quantitative Biology 2013-02-14 Andrea Cavagna , Silvio M. Duarte Queiros , Irene Giardina , Fabio Stefanini , Massimiliano Viale

We numerically examine a bidisperse system of active and passive particles coupled to a resource substrate. The active particles deplete the resource at a fixed rate and move toward regions with higher resources, while all of the particles…

Soft Condensed Matter · Physics 2024-04-23 L. Varga , A. Libal , C. Reichhardt , C. J. O. Reichhardt

Reaction-diffusion equations describe various spatially extended processes that unfold as traveling fronts moving at constant velocity. We introduce and solve analytically a model that, besides such fronts, supports solutions advancing as…

Biological Physics · Physics 2026-02-13 Louis Brezin , Kyle J. Shaffer , Kirill S. Korolev

Flocking, as paradigmatically exemplified by birds, is the coherent collective motion of active agents. As originally conceived, flocking emerges through alignment interactions between the agents. Here, we report that flocking can also…

Soft Condensed Matter · Physics 2024-07-16 Suchismita Das , Matteo Ciarchi , Ziqi Zhou , Jing Yan , Jie Zhang , Ricard Alert

A discrete-time model of reacting evolving fields, transported by a bidimensional chaotic fluid flow, is studied. Our approach is based on the use of a Lagrangian scheme where {\it fluid particles} are advected by a $2d$ symplectic map…

The three-dimensional transport pathways, the time scales of vertical transport, and the dispersion characteristics of submesoscale currents at an upper-ocean front are investigated using material points (tracer particles) that advect with…

Atmospheric and Oceanic Physics · Physics 2021-08-18 Vicky Verma , Sutanu Sarkar

Ecological systems are complex dynamical systems. Modelling efforts on ecosystems' dynamical stability have revealed that population dynamics, being highly nonlinear, can be governed by complex fluctuations. Indeed, experimental and field…

Dynamical Systems · Mathematics 2020-02-19 Lluís Alsedà , José Tomás Lázaro , Ricard Solé , Blai Vidiella , Josep Sardanyés

The emergence of collective motion, also known as flocking or swarming, in groups of moving individuals who orient themselves using only information from their neighbors is a very general phenomenon that is manifested at multiple spatial…

Statistical Mechanics · Physics 2016-04-26 David A. Quint , Ajay Gopinathan

The aerial flocking of birds, or murmurations, has fascinated observers while presenting many challenges to behavioral study and simulation. We examine how the periphery of murmurations remain well bounded and cohesive. We also investigate…

Quantitative Methods · Quantitative Biology 2024-07-22 Rama Carl Hoetzlein

Invasion fronts in ecology are well studied but very few mathematical results concern the case with variable motility (possibly due to mutations). Based on an apparently simple reaction-diffusion equation, we explain the observed phenomena…

We introduce a model of traveling agents ({\it e.g.} frugivorous animals) who feed on randomly located vegetation patches and disperse their seeds, thus modifying the spatial distribution of resources in the long term. It is assumed that…

Populations and Evolution · Quantitative Biology 2015-05-13 D. Boyer , O. López-Corona

Precisely how ecological factors influence animal social structure is far from clear. We explore this question using an agent-based model inspired by the fission-fusion society of Spider monkeys (Ateles spp). Our model introduces a…

Populations and Evolution · Quantitative Biology 2007-05-23 Gabriel Ramos-Fernández , Denis Boyer , Vian P. Gómez

We reveal that the mechanical pulsation of locally synchronised particles is a generic route to propagate deformation waves. We consider a model of dense repulsive particles whose activity drives periodic change in size of each individual.…

Soft Condensed Matter · Physics 2023-12-12 Yiwei Zhang , Étienne Fodor

Demonstrating and quantifying the respective roles of social interactions and external stimuli governing fish dynamics is key to understanding fish spatial distribution. If seminal studies have contributed to our understanding of fish…

Biological Physics · Physics 2015-06-03 Manuela Capello , Marc Soria , Pascal Cotel , Jean-Louis Deneubourg , Laurent Dagorn

We present a model of soft active particles that leads to a rich array of collective behavior found also in dense biological swarms of bacteria and other unicellular organisms. Our model uses only local interactions, such as Vicsek-type…

Soft Condensed Matter · Physics 2016-10-13 Ruben van Drongelen , Anshuman Pal , Carl P. Goodrich , Timon Idema

Spreading processes on top of active dynamics provide a novel theoretical framework for capturing emerging collective behavior in living systems. I consider run-and-tumble dynamics coupled with coagulation/decoagulation reactions that lead…

Statistical Mechanics · Physics 2025-05-29 Matteo Paoluzzi

Active particles are entities that sustain persistent out-of-equilibrium motion by consuming energy. Under certain conditions, they exhibit the tendency to self-organize through coordinated movements, such as swarming via aggregation. While…

Adaptation and Self-Organizing Systems · Physics 2026-04-09 Siddharth Chaturvedi , Ahmed EL-Gazzar , Marcel van Gerven
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