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200 papers

Plankton constitutes the productive base of aquatic ecosystems and plays an essential role in the global carbon cycle. The impact of hydrodynamic conditions on the biological activity of plankton species can manifest in a variety of…

Fluid Dynamics · Physics 2021-10-06 Alice Jaccod , Stefano Berti , Enrico Calzavarini , Sergio Chibbaro

We study the spreading of a bacterial colony undergoing turbulent like collective motion. We present two minimalistic models to investigate the interplay between population growth and coherent structures arising from turbulence. Using…

Fluid Dynamics · Physics 2017-04-06 Rayan Chatterjee , Abhijeet A. Joshi , Prasad Perlekar

Organisms often swim through density stratified fluids. In this Letter, we investigate the dynamics of small active particles swimming in density gradients and report theoretical evidence of taxis as a result of density stratification…

Soft Condensed Matter · Physics 2023-08-02 Vaseem A. Shaik , Gwynn J. Elfring

The margins within the geographic range of species are often specific in terms of ecological and evolutionary processes, and can strongly influence the species' reaction to climate change. One of the frequently observed features at range…

Populations and Evolution · Quantitative Biology 2020-02-28 R. Juhász , B. Oborny

Reaction-diffusion systems may lead to the formation of steady state heterogeneous spatial patterns, known as Turing patterns. Their mathematical formulation is important for the study of pattern formation in general and play central roles…

Pattern Formation and Solitons · Physics 2015-06-05 Lucas D. Fernandes , Marcus A. M. Aguiar

The spatio-temporal evolution of a downsized model for a desert dune is observed experimentally in a narrow water flow channel. A particle tracking method reveals that the migration speed of the model dune is one order of magnitude smaller…

Pattern Formation and Solitons · Physics 2010-06-17 Christopher Groh , Ingo Rehberg , Christof A. Kruelle

We present a novel model of stochastic differential equations for foraging behavior of fish schools in space including obstacles. We then study the model numerically. Three configurations of space with different locations of food resource…

Probability · Mathematics 2017-08-24 Ton Viet Ta , Linh Thi Hoai Nguyen

The dispersal stages of organisms with sessile adults must be able to select habitats with suitable conditions for establishment and survival, and must also be able to reach those locations. For marine planktonic larvae, movement due to…

Populations and Evolution · Quantitative Biology 2013-07-02 Thomas P. Adams , Dmitry Aleynik , Michael Burrows

We develop simple diffusion-advection models to estimate the average time it takes fish to reach one of the boundaries of an enclosure and the population distribution over time moving in the enclosure (such as a lake or slough). We start…

Analysis of PDEs · Mathematics 2019-09-18 Stephen Tennenbaum , John Gatto , Joel Trexler

We study a simple model of a forager as a walk that modifies a relaxing substrate. Within it simplicity, this provides an insight on a number of relevant and non-intuitive facts. Even without memory of the good places to feed and no…

Adaptation and Self-Organizing Systems · Physics 2015-06-18 Guillermo Abramson , Marcelo N Kuperman , Juan M Morales , Joel C Miller

We consider a system of two competing populations in two-dimensional heterogeneous environments. The populations are assumed to move horizontally and vertically with different probabilities, but are otherwise identical. We regard these…

Analysis of PDEs · Mathematics 2020-02-26 Emeric Bouin , Guillaume Legendre , Yuan Lou , Nichole Slover

Active walker models have recently proved their great value for describing the formation of clusters, periodic patterns, and spiral waves as well as the development of rivers, dielectric breakdown patterns, and many other structures. It is…

Statistical Mechanics · Physics 2009-10-31 Dirk Helbing , Frank Schweitzer , Joachim Keltsch , Peter Molnar

Using dynamical density functional theory we calculate the speed of solidification fronts advancing into a quenched two-dimensional model fluid of soft-core particles. We find that solidification fronts can advance via two different…

Soft Condensed Matter · Physics 2014-10-22 A. J. Archer , M. C. Walters , U. Thiele , E. Knobloch

Self-organization, the ability of a system of microscopically interacting entities to shape macroscopically ordered structures, is ubiquitous in Nature. Spatio-temporal patterns are abundantly observed in a large plethora of applications,…

Pattern Formation and Solitons · Physics 2019-06-17 Malbor Asllani , Timoteo Carletti , Duccio Fanelli , Philip K. Maini

Chase-and-run dynamics, in which one population pursues another that flees from it, are found throughout nature, from predator-prey interactions in ecosystems to the collective motion of cells during development. Intriguingly, in many of…

Pattern Formation and Solitons · Physics 2025-09-25 Thomas Jun Jewell , Andrew L. Krause , Philip K. Maini , Eamonn A. Gaffney

We investigate the nature of genetic drift acting at the leading edge of range expansions, building on recent results in [Hallatschek et al., Proc.\ Natl.\ Acad.\ Sci., \textbf{104}(50): 19926 - 19930 (2007)]. A well mixed population of two…

Populations and Evolution · Quantitative Biology 2010-08-16 Adnan Ali , Stefan Grosskinsky

Sheep are gregarious animals, and they often aggregate into dense, cohesive flocks, especially under stress. In this paper, we use image processing tools to analyze a publicly available aerial video showing a dense sheep flock moving under…

Biological Physics · Physics 2020-02-24 Marine de Marcken , Raphael Sarfati

We study the one-dimensional active Ising model in which aligning particles undergo diffusion biased by the signs of their spins. The phase diagram obtained varying the density of particles, their hopping rate and the temperature…

Statistical Mechanics · Physics 2024-10-17 Brieuc Benvegnen , Hugues Chaté , Pavel Krapivsky , Julien Tailleur , Alexandre Solon

Spatially resolved genetic data is increasingly used to reconstruct the migrational history of species. To assist such inference, we study, by means of simulations and analytical methods, the dynamics of neutral gene frequencies in a…

Populations and Evolution · Quantitative Biology 2008-01-15 Oskar Hallatschek , David R. Nelson

In this paper, we proposed a stochastic model which describes two species of particles moving in counterflow. The model generalizes the theoretical framework describing the transport in random systems since particles can work as mobile…

Soft Condensed Matter · Physics 2017-08-09 Eduardo Velasco Stock , Roberto da Silva , Henrique Almeida Fernandes