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Related papers: Modeling viral coevolution: HIV multi-clonal persi…

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Viral kinetics have been extensively studied in the past through the use of spatially well-mixed ordinary differential equations describing the time evolution of the diseased state. However, emerging spatial structures such as localized…

Cell Behavior · Quantitative Biology 2024-04-02 Catherine Beauchemin

Mathematical modelling of epidemiological and coevolutionary dynamics is widely being used to improve disease management strategies of infectious diseases. Many diseases present some form of intra-host quiescent stage, also known as covert…

Populations and Evolution · Quantitative Biology 2022-05-26 Usman Sanusi , Sona John , Johannes Mueller , Aurélien Tellier

Multiple viruses are widely studied because of their negative effect on the health of host as well as on whole population. The dynamics of coinfection is important in this case. We formulated a SIR model that describes the coinfection of…

Dynamical Systems · Mathematics 2019-05-14 Samia Ghersheen , Vladimir Kozlov , Vladimir G. Tkachev , Uno Wennergren

The mechanisms underlying the formation of post-infection sequelae are complex and remain controversial. This hypothesis integrates Bystryn's antibody feedback phenomenon and Imbiakha's immune cost theory, proposing for the first time a…

Quantitative Methods · Quantitative Biology 2025-06-10 Shi Qiru

We propose and investigate a delayed model that studies the relationship between HIV and the immune system during the natural course of infection and in the context of antiviral treatment regimes. Sufficient criteria for local asymptotic…

Optimization and Control · Mathematics 2018-03-19 Diana Rocha , Cristiana J. Silva , Delfim F. M. Torres

A major contribution to the onset and development of autoimmune disease is known to come from infections. An important practical problem is identifying the precise mechanism by which the breakdown of immune tolerance as a result of immune…

Quantitative Methods · Quantitative Biology 2018-05-21 F. Fatehi Chenar , Y. N. Kyrychko , K. B. Blyuss

This article is dedicated to the study and comparison of two chemostat-like competition models in a heterogeneous environment. The first model is a probabilistic model where we build a PDMP simulating the effect of the temporal…

Dynamical Systems · Mathematics 2018-06-29 Sten Madec , G Lagasquie

In this paper, we introduce a general framework for co-infection as cooperative SIR dynamics. We first solve analytically CGCG model [1] and then the generalized model in symmetric scenarios. We calculate transition points, order parameter,…

Populations and Evolution · Quantitative Biology 2019-07-24 Fatemeh Zarei , Saman Moghimi-Araghi , Fakhteh Ghanbarnejad

We propose a physical theory underlying the temporal evolution of competing virus variants that relies on the existence of (quasi) fixed points capturing the large time scale invariance of the dynamics. To motivate our result we first…

Populations and Evolution · Quantitative Biology 2022-03-23 Giacomo Cacciapaglia , Corentin Cot , Adele de Hoffer , Stefan Hohenegger , Francesco Sannino , Shahram Vatani

We consider multiple diseases spreading in a static Configuration Model network. We make standard assumptions that infection transmits from neighbor to neighbor at a disease-specific rate and infected individuals recover at a…

Populations and Evolution · Quantitative Biology 2015-06-11 Joel C. Miller

We propose a fully cooperative coinfection model in which singly infected individuals are more likely to acquire a second disease than those who are susceptible, and doubly infected individuals are also assumed to be more contagious than…

Physics and Society · Physics 2018-03-14 Jorge P. Rodríguez , Yu-Hao Liang , Jonq Juang

Objective: The reservoir of human immunodeficiency virus (HIV) latently infected cells is the major obstacle for eradication of acquired immunodeficiency syndrome (AIDS). Due to the noisy environment and multiple influencing factors in the…

Biological Physics · Physics 2024-11-06 Ruiqi Xiong , Yang Su , Ping Ao

A delayed model describing the dynamics of HIV (Human Immunodeficiency Virus) with CTL (Cytotoxic T Lymphocytes) immune response is investigated. The model includes four nonlinear differential equations describing the evolution of…

Optimization and Control · Mathematics 2018-06-13 Karam Allali , Sanaa Harroudi , Delfim F. M. Torres

Cholera, a severe gastrointestinal infection caused by the bacterium Vibrio cholerae, remains a major threat to public health with a yearly estimated global burden of 2.9 million cases. Although the majority of existing models for the…

Dynamical Systems · Mathematics 2021-05-27 Beryl Musundi

This paper considers a mathematical model based on the transmission dynamics of hepatitis C virus (HCV) infection. In addition to the usual compartments for susceptible, exposed, and infected individuals, this model includes compartments…

Populations and Evolution · Quantitative Biology 2017-12-25 Daniah Tahir , Abid Ali Lashari , Kazeem Oare Okosun

We study the population dynamics of lytic viruses which replicate slowly in dividing host cells within an organism or cell culture, and find a range of viral replication rates that allows viruses to persist, avoiding extinction of host…

Populations and Evolution · Quantitative Biology 2013-05-29 Jingshan Zhang , Eugene I. Shakhnovich

Multiscale mathematical models of hepatitis C infection have been instrumental in our understanding of direct acting antivirals. These models include the mechanisms driving intracellular viral production and explicitly model the…

Populations and Evolution · Quantitative Biology 2025-06-03 Tyler Cassidy , Giulia Belluccini , Sarafa A. Iyaniwura , Ruy M. Ribeiro , Alan S. Perelson

During primary HIV infection, the kinetics of plasma virus concentrations and CD4+ cell counts is very complex. Parametric and nonparametric models have been suggested for fitting repeated measurements of these markers. Alternatively,…

Applications · Statistics 2011-01-07 J. Drylewicz , J. Guedj , D. Commenges , R. Thiébaut

The design of protocols to suppress the propagation of viral infections is an enduring enterprise, especially hindered by limited knowledge of the mechanisms through which extinction of infection propagation comes about. We here report on a…

Populations and Evolution · Quantitative Biology 2015-02-18 Jose A. Cuesta , Jacobo Aguirre , Jose A. Capitan , Susanna C. Manrubia

Interval-censored competing risks data arise when each study subject may experience an event or failure from one of several causes and the failure time is not observed exactly but rather known to lie in an interval between two successive…

Methodology · Statistics 2016-03-02 Lu Mao , D. Y. Lin , Donglin Zeng