Related papers: Helices in Biomolecules
We demonstrate that nature has produced a close-packed helical twisted filamentous material in the biomineralization of the mollusc. In liquid crystals, twist-bend nematics have been predicted and observed. We present and analyse evidence…
The growth, form, and division of prebiotic vesicles, membraneous bags of fluid of varying components and shapes is hypothesized to have served as the substrate for the origin of life. The dynamics of these out-of-equilibrium structures is…
Helical structures like alpha helices, DNA, and microtubules have profound importance in biology. It has been suggested that these periodic arrangements of constituent units could support collective excitations similarly to crystalline…
Apart from the knots formed by the main-chain, the proteins can form numerous topological structures, when included the covalent and ion-mediated interactions. In this work, we define the protein non-trivial $\theta$-curves and identify 7…
Life demonstrates remarkable homochirality of its major building blocks: nucleic acids, amino acids, sugars, and phospholipids. We propose a mechanism that places the root of life homochirality in the formation of phospholipid bilayer…
Different aspects of protein folding are illustrated by simplified polymer models. Stressing the diversity of side chains (residues) leads one to view folding as the freezing transition of an heteropolymer. Technically, the most common…
Liquid shells, such as lipid vesicles and soap bubbles, are ubiquitous throughout biology, engineered matter, and everyday life. Their creation and disintegration are defined by a singularity that separates a topologically distinct extended…
Modern particle physics relies on high energy particle accelerators to provide collisions of various types of elementary particles in order to deduce fundamental laws of physics or properties of individual particles. The only way to…
Phase separation, crucial for spatially segregating biomolecules in cells, is well-understood in the simple case of a few components with pairwise interactions. Yet, biological cells challenge the simple picture in at least two ways: First,…
While the parameters of atomic nuclei, Z and A, indicate a general structural pattern for the nuclei, their exact masses in their fine differences seem not to exhibit the orderly kind of logical system that systematic and orderly nature…
We recover the rays in the tensor product of Hilbert spaces within a larger class of so called `states of compoundness', structured as a complete lattice with the `state of separation' as its top element. At the base of the construction…
The thermodynamical stability of a set of circular double helical molecules is analyzed by path integral techniques. The minicircles differ only in \textit{i)} the radius and \textit{ii)} the number of base pairs ($N$) arranged along the…
The occurrence of coiled or helical morphologies is common in nature, from plant roots to DNA packaging into viral capsids, as well as in applications such as oil drilling processes. In many examples, chiral structures result from the…
The helical coil is ubiquitous in biological and natural systems and often it is the basic form that leads to complex structures. This paper considers the question of its dimensionality in biological information as the helical coil goes…
We consider the Anti-de Sitter space $\mathbb{H}^3_1$ equipped with Berger-like metrics, that deform the standard metric of $\mathbb{H}^3_1$ in the direction of the hyperbolic Hopf vector field. Helix surfaces are the ones forming a…
Jets are observed in young stellar objects, X-ray sources, active galactic nuclei (AGN). The mechanisms of jet formation may be divided in regular, acting continuously for a long time, and explosive ones. Continuous mechanisms are related…
In this study we give a geometrical model which employs the smoothness of nerve fibers as differentiable curves. We show that a nerve fiber may encounter large curvature due to the possible helicial bending and hence it could cause the…
Proteins, chain molecules of amino acids, behave in ways which are similar to each other yet quite distinct from standard compact polymers. We demonstrate that the Flory theorem, derived for polymer melts, holds for compact protein native…
Many microorganisms live and evolve in complex fluids. Examples include mammalian spermatozoa in cervical mucus, worms (e.g., \textit{C. elegans}) in wet soil, and bacteria (e.g., \textit{H. pylori}) in our stomach lining. Due to the…
Patterns and forms adopted by Nature, such as the shape of living cells, the geometry of shells and the branched structure of plants, are often the result of simple dynamical paradigms. Here we show that a growing self-interacting string…