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One of the many ways cells transmit information within their volume is through steady spatial gradients of different proteins. However, the mechanism through which proteins without any sources or sinks form such single-cell gradients is not…

Biological Physics · Physics 2018-06-08 Saroj Kumar Nandi , Sam A. Safran

Diffusion models have become emerging generative models. Their sampling process involves multiple steps, and in each step the models predict the noise from a noisy sample. When the models make prediction, the output deviates from the ground…

Machine Learning · Computer Science 2025-10-28 Shifeng Xu , Yanzhu Liu , Adams Wai-Kin Kong

Models of diffusion driven pattern formation that rely on the Turing mechanism are utilized in many areas of science. However, many such models suffer from the defect of requiring fine tuning of parameters or an unrealistic separation of…

Other Quantitative Biology · Quantitative Biology 2015-03-17 Thomas Butler , Nigel Goldenfeld

We study the flocking and pattern formations of active particles with a Vicsek-like model that includes a configuration dependent noise term. In particular, we couple the strength of the noise with both the local density and orientation of…

Biological Physics · Physics 2017-02-09 Kosuke Matsui , John J. Molina

Several integrate-to-threshold models with differing temporal integration mechanisms have been proposed to describe the accumulation of sensory evidence to a prescribed level prior to motor response in perceptual decision-making tasks. An…

Neurons and Cognition · Quantitative Biology 2009-01-16 Xiang Zhou , KongFatt Wong-Lin , Philip Holmes

The numerical emulation of quantum physics and quantum chemistry often involves an intractable number of degrees of freedom and admits no known approximation in general form. In practice, representing quantum-mechanical states using…

Deep Generative Models (DGMs) are widely used to create innovative designs across multiple industries, ranging from fashion to the automotive sector. In addition to generating images of high visual quality, the task of structural design…

Computer Vision and Pattern Recognition · Computer Science 2023-11-21 Jiajie Fan , Laure Vuaille , Thomas Bäck , Hao Wang

We consider the inference problem for parameters in stochastic differential equation models from discrete time observations (e.g. experimental or simulation data). Specifically, we study the case where one does not have access to…

Numerical Analysis · Mathematics 2018-04-10 Sebastian Krumscheid

Electron transport through amorphous monatomic metallic structures generated earlier by molecular dynamics simulations is studied numerically. The interference of electronic trajectories backscattered by the structural disorder probes the…

Disordered Systems and Neural Networks · Physics 2009-10-31 V. I. Kozub , C. Oligschleger

We analyze the dynamical evolution of systems which obey simple growth laws, like diffusion limited aggregation or dielectric breakdown. We show that, if the developing patterns is sufficiently complex, a scale invariant noise spectrum is…

Condensed Matter · Physics 2009-10-22 F. Guinea , O. Pla , E. Louis

We explore the influence of turbulence on the transport of energetic particles by using test-particle simulations. We compute parallel and perpendicular diffusion coefficients for two-component turbulence, isotropic turbulence, a model…

Solar and Stellar Astrophysics · Physics 2015-08-06 Mohammad Hussein , Robert Tautz , Andreas Shalchi

Inhomogeneous cosmological perturbation equations are derived in loop quantum gravity, taking into account corrections in particular in gravitational parts. This provides a framework for calculating the evolution of modes in structure…

In the machine learning literature stochastic gradient descent has recently been widely discussed for its purported implicit regularization properties. Much of the theory, that attempts to clarify the role of noise in stochastic gradient…

Machine Learning · Computer Science 2022-10-21 Alberto Lanconelli , Christopher S. A. Lauria

We research adaptive maximum likelihood-type estimation for an ergodic diffusion process where the observation is contaminated by noise. This methodology leads to the asymptotic independence of the estimators for the variance of observation…

Statistics Theory · Mathematics 2018-05-30 Shogo H. Nakakita , Masayuki Uchida

We present a general theoretical framework to discuss mechanisms of morphogen transport and gradient formation in a cell layer. Trafficking events on the cellular scale lead to transport on larger scales. We discuss in particular the case…

Other Quantitative Biology · Quantitative Biology 2015-06-26 T. Bollenbach , K. Kruse , P. Pantazis , M. Gonzalez-Gaitan , F. Julicher

Graphene's intrinsically corrugated and wrinkled topology fundamentally influences its electronic, mechanical, and chemical properties. Experimental techniques allow the manipulation of pristine graphene and the controlled production of…

Materials Science · Physics 2025-09-09 Fabian L. Thiemann , Patrick Rowe , Andrea Zen , Erich A. Müller , Angelos Michaelides

Recovering high-dimensional statistical structure from limited measurements is a fundamental challenge in hyperspectral imaging, where capturing full-resolution data is often infeasible due to sensor, bandwidth, or acquisition constraints.…

Image and Video Processing · Electrical Eng. & Systems 2025-08-01 Jonathan Monsalve , Kumar Vijay Mishra

We consider a quantum two-level system perturbed by classical noise. The noise is implemented as a stationary diffusion process in the off-diagonal matrix elements of the Hamiltonian, representing a transverse magnetic field. We determine…

Probability · Mathematics 2008-12-18 Jean-Philippe Aguilar , Nils Berglund

The dichotomy between noise-stable and (completely) noise-sensitive stochastic models is of recent interest in probability theory. Of particular interest is the study of lattice models coming from statistical physics. The Fourier transform…

High Energy Physics - Theory · Physics 2007-05-23 Gil Kalai

We use direct and stochastic numerical simulations of the magnetohydrodynamic equations to explore the influence of turbulence on the dynamo threshold. In the spirit of the Kraichnan-Kazantsev model, we model the turbulence by a noise, with…