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We develop a two-dimensional cellular automaton (CA) as a simple model for agents moving from origins to destinations. Each agent moves towards an empty neighbor site corresponding to the minimal distance to its destination. The…

Physics and Society · Physics 2009-11-11 Najem Moussa

Pathogen genome data offers valuable structure for spatial models, but its utility is limited by incomplete sequencing coverage. We propose a probabilistic framework for inferring genetic distances between unsequenced cases and known…

Genomics · Quantitative Biology 2025-09-10 Haley Stone , Jing Du , Hao Xue , Matthew Scotch , David Heslop , Andreas Züfle , Chandini Raina MacIntyre , Flora Salim

This paper introduces a hierarchical cellular automaton (HCA)model for simulation of distributed self-organizing control of traffic signals at intersections in road network. The proposed HCA consists of three hierarchy levels that describe…

Systems and Control · Computer Science 2018-10-01 Bartłomiej Płaczek

The seasonality of respiratory diseases (common cold, influenza, etc.) is a well-known phenomenon studied from ancient times. The development of predictive models is still not only an actual unsolved problem of mathematical epidemiology but…

Populations and Evolution · Quantitative Biology 2014-04-28 Eugene B. Postnikov , Dmitry V. Tatarenkov

The SIR model is a classical model characterizing the spreading of infectious diseases. This model describes the time-dependent quantity changes among Susceptible, Infectious, and Recovered groups. By introducing space-depend effects such…

Quantitative Methods · Quantitative Biology 2024-09-18 Md Abu Talha , Yongjia Xu , Shan Zhao , Weihua Geng

Layered Cellular Automata (LCA) extends the concept of traditional cellular automata (CA) to model complex systems and phenomena. In LCA, each cell's next state is determined by the interaction of two layers of computation, allowing for…

Cellular Automata and Lattice Gases · Physics 2023-08-15 Abhishek Dalai

Understanding dynamics of an outbreak like that of COVID-19 is important in designing effective control measures. This study aims to develop an agent based model that compares changes in infection progression by manipulating different…

Populations and Evolution · Quantitative Biology 2021-06-24 Anik Burman , Sayak Chatterjee , Pramit Ghosh , Indranil Mukhokadhyay

We present a 2-dimensional cellular automaton model for the simulation of pedestrian dynamics. The model is extremely efficient and allows simulations of large crowds faster than real time since it includes only nearest-neighbour…

Statistical Mechanics · Physics 2007-05-23 Andreas Schadschneider

Motivated by analogies between the spreading of human-to-human infections and of chemical processes, we develop a comprehensive model that accounts both for infection and for transport. In this analogy, the three different populations of…

Populations and Evolution · Quantitative Biology 2020-12-08 Harisankar Ramaswamy , Assad A Oberai , Yannis C Yortsos

Viruses like influenza have long coevolved with host immune systems, gradually shaping the evolutionary trajectory of these pathogens. Host immune systems develop immunity against circulating strains, which in turn avoid extinction by…

Understanding how microenvironmental heterogeneity influences tumor progression is essential for advancing both cancer biology and therapeutic strategies. In this study, we develop a cellular automata (CA) model to simulate tumor growth…

Cell Behavior · Quantitative Biology 2026-01-26 Yue Deng , Mingjing Li , Jinzhi Lei

In this paper we study a nonlinear reaction-diffusion system which models an infectious disease caused by bacteria such as those for cholera. One of the significant features in this model is that a certain portion of the recovered human…

Analysis of PDEs · Mathematics 2022-02-01 Hong-Ming Yin , Jun Zou

We summarize a recent study of discrete (integer-valued) Hamiltonian cellular automata (CA) showing that their dynamics can only be consistently defined, if it is linear in the same sense as unitary evolution described by the Schr\"odinger…

Quantum Physics · Physics 2014-10-13 Hans-Thomas Elze

A deterministic cellular automaton rule defined on the Moore neighbourhood is studied as a model of epidemic propagation. The directed nature of the interaction between cells allows one to introduce the dependence on a disorder parameter…

Statistical Mechanics · Physics 2007-05-23 M. Bezzi , R. Livi

Recently the A/H1N1-2009 virus pandemic appeared in Mexico and in other nations. We present a study of this pandemic in the Mexican case using the SIR model to describe epidemics. This model is one of the simplest models but it has been a…

Biological Physics · Physics 2012-10-26 Mario A. Rodriguez-Meza

The use of oncolytic viruses as cancer treatment has received considerable attention in recent years, however the spatial dynamics of this viral infection is still poorly understood. We present here a stochastic agent-based model describing…

Populations and Evolution · Quantitative Biology 2023-09-06 David Morselli , Marcello Edoardo Delitala , Federico Frascoli

Influenza occurs every season and occasionally causes pandemics. Despite its low mortality rate, influenza is a major public health concern, as it can be complicated by severe diseases like pneumonia. A fast, accurate and low-cost method to…

Quantitative Methods · Quantitative Biology 2022-08-01 Yanhua Xu , Dominik Wojtczak

We introduce a modified SIR model with memory for the dynamics of epidemic spreading in a constant population of individuals. Each individual is in one of the states susceptible (${\bf S}$), infected (${\bf I}$) or recovered (${\bf R}$). In…

Populations and Evolution · Quantitative Biology 2022-03-03 Michael Bestehorn , Thomas M. Michelitsch , Bernard A. Collet , Alejandro P. Riascos , Andrzej F. Nowakowski

This study focuses on an extended model of a standard cellular automaton (CA) that includes an extra index consisting of a radius that defines a perception area for each cell in addition to the radius defined by the CA rule. Extended…

Computational Complexity · Computer Science 2015-12-22 Yoshihiko Kayama

Influenza poses a significant threat to public health, particularly among the elderly, young children, and people with underlying dis-eases. The manifestation of severe conditions, such as pneumonia, highlights the importance of preventing…

Machine Learning · Computer Science 2024-02-23 Yanhua Xu , Dominik Wojtczak
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