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Much of the information the brain processes and stores is temporal in nature - a spoken word or a handwritten signature, for example, is defined by how it unfolds in time. However, it remains unclear how neural circuits encode complex…

Neurons and Cognition · Quantitative Biology 2017-08-15 Vishwa Goudar , Dean Buonomano

Our knowledge of the sensory world is encoded by neurons in sequences of discrete, identical pulses termed action potentials or spikes. There is persistent controversy about the extent to which the precise timing of these spikes is relevant…

Neurons and Cognition · Quantitative Biology 2007-05-23 Ilya Nemenman , Geoffrey D. Lewen , William Bialek , Rob R. de Ruyter van Steveninck

This paper considers neural representation through the lens of active inference, a normative framework for understanding brain function. It delves into how living organisms employ generative models to minimize the discrepancy between…

Neurons and Cognition · Quantitative Biology 2023-10-24 Giovanni Pezzulo , Leo D'Amato , Francesco Mannella , Matteo Priorelli , Toon Van de Maele , Ivilin Peev Stoianov , Karl Friston

In a recent paper, Suppes et al. (2012) [arXiv:arXiv:1010.3063] used neural oscillators to create a model, based on reasonable neurophysiological assumptions, of the behavioral stimulus-response (SR) theory. In this paper, we describe the…

Neurons and Cognition · Quantitative Biology 2012-10-04 J. Acacio de Barros , G. Oas

In order to develop systems capable of modeling artificial life, we need to identify, which systems can produce complex behavior. We present a novel classification method applicable to any class of deterministic discrete space and time…

Cellular Automata and Lattice Gases · Physics 2020-09-01 Barbora Hudcova , Tomas Mikolov

A recent experiment suggests that neural circuits may alternatively implement continuous or discrete attractors, depending on the training set up. In recurrent neural network models, continuous and discrete attractors are separately modeled…

Biological Physics · Physics 2007-09-04 Alberto Bernacchia

The detection of neuronal communities is addressed with basis on two important concepts from neuroscience: facilitation of neuronal firing and nearly simultaneous beginning of activation of sets of neurons. More specifically,…

Physics and Society · Physics 2008-01-29 Luciano da Fontoura Costa

Deep neural networks and in particular, deep neural classifiers have become an integral part of many modern applications. Despite their practical success, we still have limited knowledge of how they work and the demand for such an…

Machine Learning · Computer Science 2020-06-04 Hamid Karimi , Tyler Derr , Jiliang Tang

We introduce bio-inspired artificial neural networks consisting of neurons that are additionally characterized by spatial positions. To simulate properties of biological systems we add the costs penalizing long connections and the proximity…

Neural and Evolutionary Computing · Computer Science 2019-10-08 Maciej Wołczyk , Jacek Tabor , Marek Śmieja , Szymon Maszke

Attractor neural network models of cortical decision-making circuits represent them as dynamical systems in the state space of neural firing rates with the attractors of the network encoding possible decisions. While the attractors of these…

Neurons and Cognition · Quantitative Biology 2025-08-12 Safaan Sadiq

The paper introduces a biologically and evolutionarily plausible neural architecture that allows a single group of neurons, or an entire cortical pathway, to be dynamically reconfigured to perform multiple, potentially very different…

Neural and Evolutionary Computing · Computer Science 2015-08-13 Thomas M. Breuel

The problem of neural coding is to understand how sequences of action potentials (spikes) are related to sensory stimuli, motor outputs, or (ultimately) thoughts and intentions. One clear question is whether the same coding rules are used…

Identifying stimulus-driven neural activity patterns is critical for studying the neural basis of cognition. This can be particularly challenging in intracranial datasets, where electrode locations typically vary across patients. This…

Neurons and Cognition · Quantitative Biology 2022-02-07 Jeremy R. Manning

Distributed networks of brain areas interact with one another in a time-varying fashion to enable complex cognitive and sensorimotor functions. Here we use novel network analysis algorithms to test the recruitment and integration of…

Neurons and Cognition · Quantitative Biology 2014-03-25 Danielle S. Bassett , Muzhi Yang , Nicholas F. Wymbs , Scott T. Grafton

A key question in neuroscience is at which level functional meaning emerges from biophysical phenomena. In most vertebrate systems, precise functions are assigned at the level of neural populations, while single-neurons are deemed…

Neurons and Cognition · Quantitative Biology 2017-03-17 Wieland Brendel , Ralph Bourdoukan , Pietro Vertechi , Christian K. Machens , Sophie Denéve

This paper addresses two main challenges facing systems neuroscience today: understanding the nature and function of a) cortical feedback between sensory areas and b) correlated variability. Starting from the old idea of perception as…

Neurons and Cognition · Quantitative Biology 2015-11-20 Ralf M. Haefner , Pietro Berkes , József Fiser

We all are fascinated by the phenomena of intelligent behavior, as generated both by our own brains and by the brains of other animals. As physicists we would like to understand if there are some general principles that govern the structure…

Biological Physics · Physics 2007-05-23 William Bialek

The predictive power of neural networks often costs model interpretability. Several techniques have been developed for explaining model outputs in terms of input features; however, it is difficult to translate such interpretations into…

Machine Learning · Computer Science 2017-08-17 Benjamin J. Lengerich , Sandeep Konam , Eric P. Xing , Stephanie Rosenthal , Manuela Veloso

The mammalian brain is a metabolically expensive device, and evolutionary pressures have presumably driven it to make productive use of its resources. For sensory areas, this concept has been expressed more formally as an optimality…

Neurons and Cognition · Quantitative Biology 2016-03-02 Deep Ganguli , Eero P. Simoncelli

To understand sensory coding, we must ask not only how much information neurons encode, but also what that information is about. This requires decomposing mutual information into contributions from individual stimuli and stimulus features:…

Neurons and Cognition · Quantitative Biology 2025-10-23 Steeve Laquitaine , Simone Azeglio , Carlo Paris , Ulisse Ferrari , Matthew Chalk
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