English
Related papers

Related papers: Driven Polymer Translocation Through a Narrow Pore

200 papers

Active polymer translocation through confined spaces is a key biological process underlying DNA transport through nuclear pores and actin filament dynamics in cell migration. Here, we use living polymer-like Tubifex tubifex worms as a model…

Soft Condensed Matter · Physics 2025-04-28 Marin Vatin , Rosa Sinaasappel , Renske Kamping , Chantal Valeriani , Emanuele Locatelli , Antoine Deblais

We analyze the diffusion of charged and neutral tracers suspended in an electrolyte embedded in a channel of varying cross-section. Making use of systematic approximations, the diffusion equation governing the motion of tracers is mapped…

Soft Condensed Matter · Physics 2016-02-17 Paolo Malgaretti , Ignacio Pagonabarraga , Miguel J Rubi

By analyzing the real space nonequilibrium dynamics of polymers, we elucidate the physics of driven translocation and propose its dynamical scaling scenario analogous to that in the surface growth phenomena. We provide a detailed account of…

Soft Condensed Matter · Physics 2011-11-28 Takuya Saito , Takahiro Sakaue

A multiscale approach is used to simulate the translocation of DNA through a nanopore. Within this scheme, the interactions of the molecule with the surrounding fluid (solvent) are explicitly taken into account. By generating polymers of…

Biological Physics · Physics 2009-11-13 Simone Melchionna , Maria Fyta , Efthimios Kaxiras , Sauro Succi

In this article, we review thermal transport in polymers with different morphologies from aligned fibers to bulk amorphous states. We survey early and recent efforts in engineering polymers with high thermal conductivity by fabricating…

Materials Science · Physics 2020-12-22 Xingfei Wei , Zhi Wang , Zhiting Tian , Tengfei Luo

We study a heuristic, core-scale model for the transport of polymer particles in a two phase (oil and water) porous medium. We are motivated by recent experimental observations which report increased oil recovery when polymers are injected…

We study the diffusion process through an ideal polymer network, using numerical methods. Polymers are modeled by random walks on the bonds of a two-dimensional square lattice. Molecules occupy the lattice cells and may jump to the…

Statistical Mechanics · Physics 2007-05-23 Yong Wu , B Schmittmann , R K P Zia

Using Molecular Dynamics simulations of a coarse-grained polymer liquid we investigate the transport of droplets on asymmetrically structured (saw-tooth shaped), vibrating substrates. Due to a continuous supply of power by substrate…

Soft Condensed Matter · Physics 2013-12-18 Nikita Tretyakov , Marcus Müller

For a wide range of modern soft functional materials the selective transport of sub-nanometer-sized molecules (`penetrants') through a stimuli-responsive polymeric membrane is key to the desired function. In this study, we investigate the…

Soft Condensed Matter · Physics 2018-08-28 Matej Kanduc , Won Kyu Kim , Rafael Roa , Joachim Dzubiella

We consider elongated cylindrical particles, modeling e.g. DNA fragments or nano-rods, while translocating under the action of an externally applied voltage through a solid state nanopore. Particular emphasis is put on the concomitant…

Soft Condensed Matter · Physics 2013-07-15 Sebastian Getfert , Thomas Töws , Peter Reimann

The motion of active polymers in a porous medium is shown to depend critically on flexibilty, activity and degree of polymerization. For given Peclet number, we observe a transition from localisation to diffusion as the stiffness of the…

Soft Condensed Matter · Physics 2019-07-17 Zahra Mokhtari , Annette Zippelius

Interacting particles diffusing in single-file is a fundamental model of transport in narrow channels where particles cannot bypass each other. An important result has been obtained by Kollmann [Phys. Rev. Lett. 90, 180602 (2003)] for the…

Statistical Mechanics · Physics 2025-07-24 Théotim Berlioz , Olivier Bénichou , Aurélien Grabsch

We develop a simulational methodology allowing for simulation of the pressure-driven flow in the pore with flat and polymer-modified walls. Our approach is based on dissipative particle dynamics and we combine earlier ideas of fluid-like…

Soft Condensed Matter · Physics 2016-07-07 J. M. Ilnytskyi , P. Bryk , A. Patrykiejew

We study the permeability and selectivity (`permselectivity') of model membranes made of polydisperse polymer networks for molecular penetrant transport, using coarse-grained, implicit-solvent computer simulations. The permeability…

Soft Condensed Matter · Physics 2020-09-30 Won Kyu Kim , Richard Chudoba , Sebastian Milster , Rafael Roa , Matej Kanduc , Joachim Dzubiella

Blockage of pores by particles is found in many processes, including filtration and oil extraction. We present filtration experiments through a linear array of ten channels with one dimension which is sub-micron, through which a dilute…

Fluid Dynamics · Physics 2018-02-26 Olivier Liot , Akash Singh , Patrice Bacchin , Paul Duru , Jeffrey F. Morris , Pierre Joseph

We study the dynamics of driven polymer translocation using both molecular dynamics (MD) simulations and a theoretical model based on the non-equilibrium tension propagation on the {\it cis} side subchain. We present theoretical and…

Soft Condensed Matter · Physics 2015-06-12 Timo Ikonen , Aniket Bhattacharya , Tapio Ala-Nissila , Wokyung Sung

This paper deals with simulation of flow and transport in porous media such as transport of groundwater contaminants. We first discuss how macro scale equations are derived and which terms have to be closed by models. The transport of…

Numerical Analysis · Mathematics 2018-07-03 Quanji Cai , Sheema Kooshapur , Michael Manhart , Ralf-Peter Mundani , Ernst Rank , Andreas Springer , Boris Vexler

In this paper, we consider directed polymers in random environment with discrete space and time. For transverse dimension at least equal to 3, we prove that diffusivity holds for the path in the full weak disorder region, i.e., where the…

Probability · Mathematics 2007-05-23 Francis Comets , Nobuo Yoshida

We investigate the influence of varying confinement on the dynamics of polymer translocation through a cone shaped channel. For this, a linear polymer chain is modeled by a self voiding walks (SAWs) on a square lattice. The cis-side of a…

Soft Condensed Matter · Physics 2024-01-10 Manish Dwivedi , Sumitra Rudra , Sanjay Kumar

In this letter, we show that pore-scale diffusiophoresis of colloidal particles along local salt gradients manifests in the macroscopic dispersion of particles in a porous medium. Despite is transient character, this microscopic phenomenon…

Soft Condensed Matter · Physics 2023-03-16 Mamta Jotkar , Pietro de Anna , Marco Dentz , Luis Cueto-Felgueroso