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The stochastic mutual repressor model is analysed using perturbation methods. This simple model of a gene circuit consists of two genes and three promotor states. Either of the two protein products can dimerize, forming a repressor molecule…

Biological Physics · Physics 2014-06-12 Jay Newby

We undertake a preliminary numerical investigation to understand how the addition of white and colored noise to a time series affects the topology and structure of the underlying chaotic attractor. We use the methods and measures of…

Data Analysis, Statistics and Probability · Physics 2015-08-13 Rinku Jacob , K. P. Harikrishnan , R. Misra , G. Ambika

Noise can induce coherent oscillations in excitable systems without periodic orbits. Here, we establish a method to derive a hybrid system approximating the noise-induced coherent oscillations in excitable systems and further perform phase…

Adaptation and Self-Organizing Systems · Physics 2022-05-26 Jinjie Zhu , Yuzuru Kato , Hiroya Nakao

Relationships between inter-cluster synchronization phenomena and external noise are studied on the basis of noise level-free analysis. We consider a mean-field model of ensembles of coupled limit cycle oscillators with two natural…

Statistical Mechanics · Physics 2011-01-04 K. Okumura , A. Ichiki , M. Shiino

When biological populations expand into new territory, the evolutionary outcomes can be strongly influenced by genetic drift, the random fluctuations in allele frequencies. Meanwhile, spatial variability in the environment can also…

Populations and Evolution · Quantitative Biology 2024-06-27 Jimmy Gonzalez Nuñez , Jayson Paulose , Wolfram Möbius , Daniel A. Beller

We explore a class of hybrid (piecewise deterministic) systems characterized by a large number of individuals inhabiting an environment whose state is described by a set of continuous variables. We use analytical and numerical methods from…

Statistical Mechanics · Physics 2012-09-10 John Realpe-Gomez , Tobias Galla , Alan J. McKane

Text-to-image diffusion models generate images by gradually converting white Gaussian noise into a natural image. White Gaussian noise is well suited for producing diverse outputs from a single text prompt due to its absence of structure.…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Nadav Z. Cohen , Ofir Abramovich , Ariel Shamir

A noise source model, consisting of a pulse sequence at random times with memory, is presented. By varying the memory we can obtain variable randomness of the stochastic process. The delay time between pulses, i. e. the noise memory,…

Statistical Mechanics · Physics 2009-09-29 O. Chichigina , D. Valenti , B. Spagnolo

Noise is a consequence of acquiring and pre-processing data from the environment, and shows fluctuations from different sources---e.g., from sensors, signal processing technology or even human error. As a machine learning technique, Genetic…

Neural and Evolutionary Computing · Computer Science 2017-07-05 Luis F. Miranda , Luiz Otavio V. B. Oliveira , Joao Francisco B. S. Martins , Gisele L. Pappa

We discuss the detection of gravitational-wave backgrounds in the context of Bayesian inference and suggest a practical definition of what it means for a signal to be considered stochastic---namely, that the Bayesian evidence favors a…

General Relativity and Quantum Cosmology · Physics 2015-08-12 Neil J. Cornish , Joseph D. Romano

The evolutionary origins of structural features in reconstructed gene-regulatory networks (GRNs) remain poorly understood, especially given the random aspects of gene expression. Here, we extend a classical model of GRN evolution to allow a…

Populations and Evolution · Quantitative Biology 2026-04-30 Leonardo Ivan Estrella Dzib , James Holehouse

Most biological systems are formed by component parts that to some degree are inter-related. Groups of parts that are more associated among themselves and are relatively autonomous from others are called modules. One of the consequences of…

Populations and Evolution · Quantitative Biology 2013-08-12 Gabriel Marroig , Diogo Melo , Guilherme Garcia

Retrieval of exoplanetary atmospheric properties from their transmission spectra commonly assumes that the errors in the data are Gaussian and independent. However, non-Gaussian noise can occur due to instrumental or stellar systematics and…

Earth and Planetary Astrophysics · Physics 2021-11-17 Jegug Ih , Eliza M. -R. Kempton

This paper deals with the nonlinear stochastic dynamics of a piezoelectric energy harvesting system subjected to a harmonic external excitation disturbed by Gaussian colored noise. A parametric analysis is conducted, where the effects of…

Statistical Mechanics · Physics 2021-07-30 Vinicius Gonçalves Lopes , João Victor L. L. Peterson , Americo Cunha

A harmonic oscillator under influence of the noise is a basic model of various physical phenomena. Under Gaussian white noise the position and velocity of the oscillator are independent random variables which are distributed according to…

Statistical Mechanics · Physics 2011-07-01 Igor M. Sokolov , Bartlomiej Dybiec , Werner Ebelling

We investigate the evolution of Boolean networks subject to a selective pressure which favors robustness against noise, as a model of evolved genetic regulatory systems. By mapping the evolutionary process into a statistical ensemble and…

Disordered Systems and Neural Networks · Physics 2012-04-11 Tiago P. Peixoto

In this paper, we examine the effects of correlated Gaussian noise on a two-dimensional neuronal network that is locally modeled by the Rulkov map. More precisely, we study the effects of the noise correlation on the variations of the mean…

Disordered Systems and Neural Networks · Physics 2010-09-23 Xiaojuan Sun , Matjaz Perc , Qishao Lu , Jürgen Kurths

In high-dimensional data, structured noise caused by observed and unobserved factors affecting multiple target variables simultaneously, imposes a serious challenge for modeling, by masking the often weak signal. Therefore, (1) explaining…

A prototype model of a stochastic one-variable system with a linear restoring force driven by two cross-correlated multiplicative and additive Gaussian white noises was considered earlier [S. I. Denisov et al., Phys. Rev. E 68, 046132…

Statistical Mechanics · Physics 2016-12-13 A. N. Vitrenko

In this work we study the majority-vote model with the presence of two distinc noises. The first one is the usual noise $q$, that represents the probability that a given agent follows the minority opinion of his/her social contacts. On the…

Physics and Society · Physics 2016-03-18 Allan R. Vieira , Nuno Crokidakis
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