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Branching processes are widely used to model evolutionary and population dynamics as well as the spread of infectious diseases. To characterize the dynamics of their growth or spread, the basic reproduction number $R_0$ has received…

Populations and Evolution · Quantitative Biology 2021-09-02 Johannes Pausch , Rosalba Garcia-Millan , Gunnar Pruessner

Noise through its interaction with the nonlinearity of the living systems can give rise to counter-intuitive phenomena. In this paper we shortly review noise induced effects in different ecosystems, in which two populations compete for the…

Populations and Evolution · Quantitative Biology 2016-09-26 D. Valenti , A. Giuffrida , G. Denaro , N. Pizzolato , L. Curcio , B. Spagnolo , S. Mazzola , G. Basilone , A. Bonanno

We investigate extinction of a long-lived self-regulating stochastic population, caused by intrinsic (demographic) noise. Extinction typically occurs via one of two scenarios depending on whether the absorbing state n=0 is a repelling…

Statistical Mechanics · Physics 2015-05-13 Michael Assaf , Baruch Meerson

The stochastic mutual repressor model is analysed using perturbation methods. This simple model of a gene circuit consists of two genes and three promotor states. Either of the two protein products can dimerize, forming a repressor molecule…

Biological Physics · Physics 2014-06-12 Jay Newby

The stochastic extinction and stability in the mean of a family of SEIRS malaria models with a general nonlinear incidence rate is presented. The dynamics is driven by independent white noise processes from the disease transmission and…

Populations and Evolution · Quantitative Biology 2020-05-05 Divine Wanduku

In this paper, we investigate a Langevin model subjected to stochastic intensity noise (SIN), which incorporates temporal fluctuations in noise-intensity. We derive a higher-order Fokker-Planck equation (HFPE) of the system, taking into…

Statistical Mechanics · Physics 2011-01-25 Yoshihiko Hasegawa , Masanori Arita

We consider a prototypical nonlinear system which can be stabilized by multiplicative noise: an underdamped non-linear pendulum with a stochastically vibrating pivot. A numerical solution of the pertinent Fokker-Planck equation shows that…

Statistical Mechanics · Physics 2015-05-13 Yuval B. Simons , Baruch Meerson

Noise and spatial degrees of freedom characterize most ecosystems. Some aspects of their influence on the coevolution of populations with cyclic interspecies competition have been demonstrated in recent experiments [e.g. B. Kerr et al.,…

Populations and Evolution · Quantitative Biology 2007-12-08 Tobias Reichenbach , Mauro Mobilia , Erwin Frey

We analyze the influence of long-range correlated (colored) external noise on extinction phase transitions in growth and spreading processes. Uncorrelated environmental noise (i.e., temporal disorder) was recently shown to give rise to an…

Statistical Mechanics · Physics 2018-08-15 Alexander H. O. Wada , Matthew Small , Thomas Vojta

We consider the dynamics of a population of organisms containing two mutually inhibitory gene regulatory networks, that can result in a bistable switch-like behaviour. We completely characterize their local and global dynamics in the…

Molecular Networks · Quantitative Biology 2016-10-07 Michael C. Mackey , Marta Tyran-Kaminska

We investigate (in)stabilities of periodic patterns under stochastic forcing in reaction-diffusion equations exhibiting a so-called Busse balloon. Specifically, we used a one-dimensional Klausmeier model for dryland vegetation patterns.…

Analysis of PDEs · Mathematics 2024-12-23 Christian Hamster , Peter van Heijster , Eric Siero

We study the ABC model (A + B --> 2B, B + C --> 2C, C + A --> 2A), and its counterpart: the three--component neutral drift model (A + B --> 2A or 2B, B + C --> 2B or 2C, C + A --> 2C or 2A.) In the former case, the mean field approximation…

Adaptation and Self-Organizing Systems · Physics 2009-11-07 Margarita Ifti , Birger Bergersen

We find that discrete noise of inhibiting (signal) molecules can greatly delay the extinction of plasmids in a plasmid replication system: a prototypical biochemical regulatory network. We calculate the probability distribution of the…

Molecular Networks · Quantitative Biology 2016-10-06 Michael Assaf , Baruch Meerson

We introduce an individual-based model of a complex ecological community with random interactions. The model contains a large number of species, each with a finite population of individuals, subject to discrete reproduction and death…

Populations and Evolution · Quantitative Biology 2023-07-19 Ferran Larroya , Tobias Galla

We investigate timing and spectral characteristics of the transient X-ray pulsar 2S 1417$-$624 during its 2018 outburst with \emph{NICER} follow up observations. We describe the spectra with high-energy cut-off and partial covering fraction…

High Energy Astrophysical Phenomena · Physics 2021-12-15 M. M. Serim , O. C. Ozudogru , C. K. Donmez , S. Sahiner , D. Serim , A. Baykal , S. C. Inam

In this paper we study the diffusion of an SIS-type epidemics on a network under the presence of a random environment, that enters in the definition of the infection rates of the nodes. Accordingly, we model the infection rates in the form…

Probability · Mathematics 2016-07-25 Stefano Bonaccorsi , Stefania Ottaviano

We study the effects of demographic stochasticity on the long-term dynamics of biological coevolution models of community assembly. The noise is induced in order to check the validity of deterministic population dynamics. While mutualistic…

Populations and Evolution · Quantitative Biology 2010-04-16 Yohsuke Murase , Takashi Shimada , Nobuyasu Ito , Per Arne Rikvold

In stochastic population dynamics, stochastic wandering can produce transition to an absorbing state. In particular, under Allee effects, low densities amplify the possibility of population collapse. We investigate this in an…

Populations and Evolution · Quantitative Biology 2026-01-13 Luis F. Gordillo , Priscilla E. Greenwood

In large but finite populations, weak demographic stochasticity due to random birth and death events can lead to population extinction. The process is analogous to the escaping problem of trapped particles under random forces. Methods…

Populations and Evolution · Quantitative Biology 2018-11-28 Xiaoquan Yu , Xiang-Yi Li

Stochastic fluctuations are central to the understanding of extinction dynamics. In the context of population models they allow for the description of the transition from the vicinity of a non-trivial fixed point of the deterministic…

Statistical Mechanics · Physics 2015-08-04 Claudia Cianci , Duccio Fanelli , Alan J. McKane
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