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We present a novel approach allowing the study of rare events like fixation under fluctuating environments, modeled as extrinsic noise, in evolutionary processes characterized by the dominance of one species. Our treatment consists of…

Populations and Evolution · Quantitative Biology 2013-12-16 Michael Assaf , Mauro Mobilia , Elijah Roberts

We study the role of noise on the nature of the transition to collective motion in dry active matter. Starting from field theories that predict a continuous transition at the deterministic level, we show that fluctuations induce a…

Soft Condensed Matter · Physics 2021-04-12 David Martin , Hugues Chaté , Cesare Nardini , Alexandre Solon , Julien Tailleur , Frédéric van Wijland

Models of population growth and extinction are an increasingly popular subject of study. However, consequences of stochasticity and noise in shaping distributions and outcomes are not sufficiently explored. Here we consider a distributed…

Statistical Mechanics · Physics 2020-11-11 Bertrand Ottino-Löffler , Mehran Kardar

Based on a system-reservoir model, where the reservoir is driven by an external stationary, Gaussian noise with arbitrary decaying correlation function, we study the escape rate from a metastable state in the energy diffusion regime. For…

Chemical Physics · Physics 2009-11-11 Jyotipratim Ray Chaudhuri , Debashis Barik , Suman Kumar Banik

We consider a population dynamics model coupling cell growth to a diffusion in the space of metabolic phenotypes as it can be obtained from realistic constraints-based modelling. In the asymptotic regime of slow diffusion, that coincides…

Populations and Evolution · Quantitative Biology 2017-02-17 Daniele De Martino , Davide Masoero

We first present a new stochastic version of the Cucker-Smale model of the emergent behavior in flocks in which the mutual communication between individuals is affected by random factor. Then, the existence and uniqueness of global solution…

Probability · Mathematics 2015-08-28 Ta Viet Ton , Nguyen Thi Hoai Linh , Atsushi Yagi

Propagating fronts arising from bistable reaction-diffusion equations are a purely deterministic effect. Stochastic reaction-diffusion processes also show front propagation which coincides with the deterministic effect in the limit of small…

Statistical Mechanics · Physics 2015-05-20 E. Khain , Y. T. Lin , L. M. Sander

Chemical reactions in cell are subject to intense stochastic fluctuations. An important question is how the fundamental physiological behavior of cell is kept stable against those noisy perturbations. In this paper a stochastic model of…

Molecular Networks · Quantitative Biology 2009-11-13 Yurie Okabe , Masaki Sasai

We present a mathematical formulation of a theory of language change. The theory is evolutionary in nature and has close analogies with theories of population genetics. The mathematical structure we construct similarly has correspondences…

Statistical Mechanics · Physics 2015-05-28 G. J. Baxter , R. A. Blythe , W. Croft , A. J. McKane

Rock-paper-scissors games metaphorically model cyclic dominance in ecology and microbiology. In a static environment, these models are characterized by fixation probabilities obeying two different "laws" in large and small well-mixed…

Populations and Evolution · Quantitative Biology 2020-02-26 Robert West , Mauro Mobilia

Studies on the role of fluctuations in signal propagation and on gene regulation in monoclonal bacterial population have been extensively pursued based on the machinery of two-component system. The bacterial two-component system shows noise…

Molecular Networks · Quantitative Biology 2017-01-10 Tarunendu Mapder , Sudip Chattopadhyay , Suman K Banik

We present a simple analytical tool which gives an approximate insight into the stationary behavior of nonlinear systems undergoing the influence of a weak and rapid noise from one dominating source, e.g. the kinetic equations describing a…

Quantitative Methods · Quantitative Biology 2008-08-13 Anna Ochab-Marcinek

Competitive birth-death processes often exhibit an oscillatory behavior. We investigate a particular case where the oscillation cycles are marginally stable on the mean-field level. An iconic example of such a system is the Lotka-Volterra…

Populations and Evolution · Quantitative Biology 2015-05-13 Matthew Parker , Alex Kamenev

We consider non-demographic noise in the form of uncertainty in the reaction step size, and reveal a dramatic effect this noise may have on the stability of self-regulating populations. Employing the reaction scheme mA->kA, but allowing,…

Populations and Evolution · Quantitative Biology 2018-03-07 Shay Be'er , Michael Assaf

Noise, through its interaction with the nonlinearity of the living systems, can give rise to counter-intuitive phenomena such as stochastic resonance, noise-delayed extinction, temporal oscillations, and spatial patterns. In this paper we…

Populations and Evolution · Quantitative Biology 2007-05-23 B. Spagnolo , D. Valenti , A. Fiasconaro

We present a broad class of semi-parametric models for time series of random sums of positive variables. Our methodology allows the number of terms inside the sum to be time-varying and is therefore well suited to many examples encountered…

Methodology · Statistics 2022-06-22 Zinsou Max Debaly , Philippe Marchand , Miguel Montoro Girona

We consider the rates of noise-induced switching between the stable states of dissipative dynamical systems with delay and also the rates of noise-induced extinction, where such systems model population dynamics. We study a class of systems…

Statistical Mechanics · Physics 2015-01-27 Ira B. Schwartz , Lora Billings , Thomas W. Carr , Mark Dykman

This work is devoted to the study of a stochastic logistic growth model with and without the Allee effect. Such a model describes the evolution of a population under environmental stochastic fluctuations and is in the form of a stochastic…

Populations and Evolution · Quantitative Biology 2020-08-05 Almaz Tesfay , Daniel Tesfay , James Brannan , Jinqiao Duan

In this paper, we consider the Cucker-Smale flocking particles which are subject to the same velocity-dependent noise, which exhibits a phase change phenomenon occurs bringing the system from a "non flocking" to a "flocking" state as the…

Analysis of PDEs · Mathematics 2017-11-29 Young-Pil Choi , Samir Salem

Species populations often modify their environment as they grow. When environmental feedback operates more slowly than population growth, the system can undergo boom-bust dynamics, where the population overshoots its carrying capacity and…

Populations and Evolution · Quantitative Biology 2026-05-27 Pablo Moreno-Spiegelberg , Javier Aguilar