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DNA supercoiling plays an important role in a variety of cellular processes. The torsional stress related with supercoiling may be also involved in gene regulation through the local structure and dynamics of the double helix. To check this…

Biomolecules · Quantitative Biology 2015-05-19 Alexey K. Mazur

The effect of sequence heterogeneity on the dynamics of molecular motors is reviewed and analyzed using a set of recently introduced lattice models. First, we review results for the influence of heterogenous tracks such as a single-strand…

Statistical Mechanics · Physics 2015-06-25 Yariv Kafri , David R. Nelson

Filamentary structures are often identified in column density maps of molecular clouds, and appear to be important for both low- and high-mass star formation. Theoretically, these structures are expected to form in regions where the…

Astrophysics of Galaxies · Physics 2023-05-03 F. D. Priestley , D. Arzoumanian , A. P. Whitworth

We use experiments, numerical simulations, and theoretical analysis to investigate the propagation of highly nonlinear solitary waves in periodic arrangements of dimer (two-mass) and trimer (three-mass) cell structures in one-dimensional…

Pattern Formation and Solitons · Physics 2007-12-21 Mason A. Porter , Chiara Daraio , Ivan Szelengowicz , Eric B. Herbold , P. G. Kevrekidis

We examine the effect of inhomogeneous broadening on the collective response of a planar metamaterial consisting of asymmetric split ring resonators. We show that such a response leads to a transmission resonance that can persist when the…

Optics · Physics 2012-12-11 Stewart D. Jenkins , Janne Ruostekoski

The absorption of ultraviolet light creates excitations in DNA, which subsequently start moving in the helix. Their fate is important for an understanding of photo damage, and is determined by the interplay of electronic couplings between…

Chemical Physics · Physics 2015-05-18 Arend G. Dijkstra , Yoshitaka Tanimura

We investigate the influence of deformation on the possible occurrence of long-lived $K$ isomers in Hf isotopes around N=116, using configuration-constrained calculations of potential-energy surfaces. Despite having reduced shape…

Nuclear Theory · Physics 2011-07-08 H. L. Liu , F. R. Xu , P. M. Walker , C. A. Bertulani

Using time-dependent density functional theory, high-harmonic generation (HHG) is studied in one-dimensional structures of sizes from a single nucleus up to hundreds of nuclei. The HHG cutoff is observed to extent linearly with the system…

Atomic Physics · Physics 2018-04-27 Kenneth K. Hansen , Dieter Bauer , Lars Bojer Madsen

A multifield asymptotic homogenization technique for periodic thermo-diffusive elastic materials is provided in the present study. Field equations for the first-order equivalent medium are derived and overall constitutive tensors are…

Fluid Dynamics · Physics 2020-02-27 Francesca Fantoni , Andrea Bacigalupo

Long-wavelength spin waves in disordered magnetic systems have been investigated. In the framework of the Heisenberg model with magnetic dipole and exchange interactions between spins it is found that an additional longitudinal spin wave…

Disordered Systems and Neural Networks · Physics 2008-01-31 L. V. Lutsev

High-order harmonic generation (HHG) in aligned linear molecules can offer valuable information about strong-field interactions in lower-lying molecular orbitals, but extracting this information is difficult for three-dimensional molecular…

Motivated by recent experiments [Claussen N R et al. 2003 Preprint cond-mat/0302195] we investigate the magnetic-field dependence of the Josephson frequency of coherent atom-molecule oscillations near a Feshbach resonance. Far off resonance…

Condensed Matter · Physics 2009-11-10 R. A. Duine , H. T. C. Stoof

The intrinsic double helix conformation of the DNA strands is known to be the key ingredient of control of the electric current through the DNA by the perpendicular (gate) electric field. We show theoretically that Bloch oscillations in the…

Materials Science · Physics 2009-10-25 A. V. Malyshev , V. A. Malyshev , F. Dominguez-Adame

Characterizing time delays in molecular photoionization as a function of the ejected electron emission direction relative to the orientation of the molecule and the light polarization axis pro-vides unprecedented insights into the…

We study the excitation of spatial patterns by resonant, multi-frequency forcing in systems undergoing a Hopf bifurcation to spatially homogeneous oscillations. Using weakly nonlinear analysis we show that for small amplitudes only stripe…

Pattern Formation and Solitons · Physics 2007-06-07 Jessica M. Conway , Hermann Riecke

To explore resonance phenomena in the nonlinear region, we show by experimental measurements and theoretical analyses that resonance happens in modulation instability (MI) from non-instantaneous nonlinearities in photorefractive crystals.…

Pattern Formation and Solitons · Physics 2018-08-01 Ray-Ching Hong , Chun-Yan Lin , You-Lin Chuang , Chien-Ming Wu , Yonan Su , Jeng Yi Lee , Chien-Chung Jeng , Ming-Feng Shih , Ray-Kuang Lee

We exploit the presence of approximate (broken) symmetries to obtain general scaling laws governing the process of pattern formation in weakly damped Faraday waves. Specifically, we consider a two-frequency forcing function and trace the…

Pattern Formation and Solitons · Physics 2009-11-07 Jeff Porter , Mary Silber

We investigated the high-order harmonic generation (HHG) process of diatomic molecular ion $\mathrm{H}_2^+$ in non-Born-Oppenheimer approximations. The corresponding three-dimensional time-dependent Schr\"odinger equation is solved with…

Atomic Physics · Physics 2017-02-28 Mu-Zi Li , Guang-Rui Jia , Xue-Bin Bian

This article investigates how a uniform high frequency (HF) drive applied to each site of a weakly-coupled discrete nonlinear resonator array can modulate the onsite natural stiffness and damping and thereby facilitate the active tunability…

Chaotic Dynamics · Physics 2025-12-05 Somnath Roy , Mattia Coccolo , Anirban Ray , Asesh Roy Chowdhury

We suggest the statistical spectral theory of oscillations in quasi-optical cavity resonator filled with random inhomogeneities. It is shown that inhomogeneities in the resonator result in intermode scattering leading to the shift and…

Disordered Systems and Neural Networks · Physics 2013-02-01 E. M. Ganapolskii , Z. E. Eremenko , Yu. V. Tarasov