Related papers: Modeling oscillatory Microtubule--Polymerization
Inspired by patterns observed in mixtures of microtubules and molecular motors, we propose continuum equations for the evolution of motor density, and microtubule orientation. The chief ingredients are the transport of motors along tubules,…
In this paper, we investigate a reaction-diffusion-advection model with time delay effect. The stability/instability of the spatially nonhomogeneous positive steady state and the associated Hopf bifurcation are investigated when the given…
The effect of multiplicative stochastic perturbations on Hamiltonian systems on the plane is investigated. It is assumed that perturbations fade with time and preserve a stable equilibrium of the limiting system. The paper investigates…
{We study a model of small-amplitude traveling waves arising in a supercritical Hopf-bifurcation, that are coupled to a slowly varying, real field. The field is advected by the waves and, in turn, affects their stability via a coupling to…
This paper concerns a free boundary problem modeling tumor growth with angiogenesis and two time delays. The two delays represent the time taken for cells to undergo mitosis and modify the rate of cell loss because of apoptosis,…
Since the seminal work by H.L.F. Helmholtz in 1863, to understand the basic principles of hearing has been a great, but still unresolved, challenge for physicists. Some time ago, it has been pointed out (Egu\'{\i}luz et al., Phys. Rev.…
We demonstrate that the amplitudes of optical solitons in nonlinear multisequence optical waveguide coupler systems with weak linear and cubic gain-loss exhibit large stable oscillations along ultra-long distances. The large stable…
Ordered distributive double phosphorylation is a recurrent motif in intracellular signaling and control. It is either sequential (where the site phosphorylated last is dephosphorylated first) or cyclic (where the site phosphorylated first…
A classical microscopic theory of rovibrational motion at high angular momenta in symmetrical non-linear molecules AB$_2$ is derived within the framework of small oscillations near the stationary states of a rotating molecule. The…
Nonlinear normal modes are periodic orbits that survive in nonlinear many-body Hamiltonian systems, and their instability is crucial for relaxation dynamics. Here, we study the instability process of the $\pi/3$-mode in the…
In this article we introduce an original model in order to study the emergence of chaos in a reaction diffusion system in the presence of self- and cross-diffusion terms. A Fourier Spectral Method is derived to approximate equilibria and…
Hypoelliptic diffusion processes can be used to model a variety of phenomena in applications ranging from molecular dynamics to audio signal analysis. We study parameter estimation for such processes in situations where we observe some…
A biochemical oscillator model, describing developmental stage of myxobacteria, is analyzed mathematically. Observations from numerical simulations show that in a certain range of parameters, the corresponding system of ordinary…
Dielectric spectroscopy measurements over a broad range of temperature and pressure were carried out on poly(oxybutylene) (POB), a type-A polymer (dielectrically-active normal mode). There are three dynamic processes appearing at lower…
Different types of synchronization states are found when non-linear chemical oscillators are embedded into an active medium that interconnects the oscillators but also contributes to the system dynamics. Using different theoretical tools,…
We study the steady state of an assembly of microtubules in a confined volume, analogous to the situation inside a cell where the cell boundary forms a natural barrier to growth. We show that the dynamical equations for growing and…
Large-scale collective oscillation is discovered in the two-dimensional Euler equations. For initial conditions far from a base stationary flow, the system does not relax to the base stationary flow, but instead shows pairs of coherent…
Sudden turn-on of a matter-wave source leads to characteristic oscillations of the probability density which are the hallmark feature of diffraction in time. The apodization of matter waves relies on the use of smooth aperture functions…
We investigate the down-hill creep of a layer of granular material on a slope caused by an oscillatory variation of the size of the particles. The material is modeled as an athermal two dimensional polydisperse system of soft disks under…
The coexistence of an abnormal rhythm and a normal steady state is often observed in nature (e.g., epilepsy). Such a system is modeled as a bistable oscillator that possesses both a limit cycle and a fixed point. Although bistable…