Related papers: Modeling oscillatory Microtubule--Polymerization
We study analytically and numerically the noise-induced transition between an absorbing and an oscillatory state in a Duffing oscillator subject to multiplicative, Gaussian white noise. We show in a non-perturbative manner that a stochastic…
We study the Becker-D\"oring bubblelator, a variant of the Becker-D\"oring coagulation-fragmentation system that models the growth of clusters by gain or loss of monomers. Motivated by models of gas evolution oscillators from physical…
Nonlinear evolution of a reaction--super-diffusion system near a Hopf bifurcation is studied. Fractional analogues of complex Ginzburg-Landau equation and Kuramoto-Sivashinsky equation are derived, and some of their analytical and numerical…
We investigate a simple model of microtubule dynamics in which a microtubule evolves by: (i) attachment of guanosine triphosphate (GTP) to its end at rate lambda, (ii) GTP converting irreversibly to guanosine diphosphate (GDP) at rate 1,…
Chemically fueled supramolecular systems can exhibit complex, time-dependent behaviors reminiscent of living matter when maintained far from equilibrium by continuous energy or fuel consumption. Here, we introduce a minimal…
We present a bifurcation analysis of a normal form for travelling waves in one-dimensional excitable media. The normal form which has been recently proposed on phenomenological grounds is given in form of a differential delay equation. The…
We present a physical mechanism that can cause the mitotic spindle to oscillate. The driving force for this mechanism emerges from the polymerization of astral microtubules interacting with the cell cortex. We show that Brownian ratchet…
We report a novel route to active turbulence, observed in numerical simulations of a polar active fluid model under confinement. To deal with large-scale computations with arbitrary geometries, we developed a GPU-based scheme that can be…
We consider the motion of a harmonically trapped overdamped particle, which is submitted to a self-phoretic force, that is proportional to the gradient of a diffusive field for which the particle itself is the source. In agreement with…
We analyze rate-dependent tipping in a fast/slow system with an equilibrium near the fold of a critical manifiold. We find a Hopf bifurcation as the rate parameter increases in the reduced co-moving system. This implies the growth of a…
We study the behavior of vortex filaments subject to a uniform density of phase twist in oscillatory media described by the complex Ginzburg-Landau equation. The first instability is a supercritical Hopf bifurcation to stable propagating…
In this paper, an attempt has been made to understand the parametric excitation of a periodic orbit of nonlinear oscillator which can be a limit cycle, center or a slowly decaying center-type oscillation. For this a delay model is…
Droplet deformations caused by substrate vibrations are ubiquitous in nature and highly relevant for applications such as microreactors and single-cell sorting. The vibrations can induce droplet oscillations, a fundamental process that…
This letter describes a periodically oscillating microfoam flow. For constant input parameters, both the produced bubble volume and the flow rate vary over a factor two. We explicit the link between foam topology alternance and flow rate…
The disappearance of the guanosine triphosphate (GTP)-tubulin cap is widely believed to be the forerunner event for the growth-shrinkage transition (`catastrophe') in microtubule filaments in eukaryotic cells. We study a discrete version of…
Systematic microcanonical inflection-point analysis of precise numerical results obtained in extensive generalized-ensemble Monte Carlo simulations reveals a bifurcation of the coil-globule transition line for polymers with a bending…
Biochemical reactions with oscillatory behavior play an essential role in synthetic biology at the microscopic scale. Although a robust stability theory for deterministic chemical oscillators in the macroscopic limit exists, the dynamical…
We focus on the qualitative analysis of a reaction-diffusion with spatial heterogeneity. The system is a generalization of the well known FitzHugh-Nagumo system in which the excitability parameter is space dependent. This heterogeneity…
A dynamical system that undergoes a supercritical Hopf's bifurcation is perturbed by a multiplicative Brownian motion that scales with a small parameter $\epsilon$. The random fluctuations of the system at the critical point are studied…
Dynamical properties of ultradiscrete Hopf bifurcation, similar to those of the standard Hopf bifurcation, are discussed by proposing a simple model of ultradiscrete equations with max-plus algebra. In ultradiscrete Hopf bifurcation, limit…