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Related papers: Phase Transition of DNA-Linked Gold Nanoparticle

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We report that gold thermally deposited onto n-layer graphenes interacts differently with these substrates depending on the number layer, indicating the different surface properties of graphenes. This results in thickness-dependent…

Chemical Physics · Physics 2011-03-24 Haiqing Zhou , Caiyu Qiu , Zheng Liu , Huaichao Yang , Lijun Hu , Ji Liu , Haifang Yang , Changzhi Gu , Lianfeng Sun

Enhanced optical absorption of molecules in the vicinity of metallic nanostructures is key to a number of surface-enhanced spectroscopies and of great general interest to the fields of plasmonics and nano-optics. Yet, experimental access to…

A simplified model for the closed circular DNA (ccDNA) is proposed to describe some specific features of the helix-coil transition in such molecule. The Hamiltonian of ccDNA is related to the one introduced earlier for the linear DNA. The…

Biomolecules · Quantitative Biology 2009-11-10 V. F. Morozov , Shura Hayryan , E. Sh. Mamasakhlisov , A. V. Grigoryan , A. V. Badasyan , Chin-Kun Hu

In this work the synthesis and characterization of novel gold-nanodiamond nanoparticles was performed. The synthesis was based on the reduction of gold onto the different types of nanodiamond (annealed or annealed and oxidized, 50 or 230…

We have developed a technology to reproducibly make gaps with distance control on the single atom scale. The gold contacts are flat on the nanometre scale and are fabricated on an oxidized aluminium film that serves as a gate. We show that…

Materials Science · Physics 2009-11-10 Y. V. Kervennic , D. Vanmaekelbergh , L. P Kouwenhoven , H. S. J Van der Zant

We describe several unexpected phenomena, caused by a solid-solid phase transition (gel-to-crystal) typical for all main classes of lipid substances - phospholipids, triglycerides, diglycerides, alkanes, etc. We discovered that this…

Materials Science · Physics 2020-08-26 Diana Cholakova , Desislava Glushkova , Slavka Tcholakova , Nikolai Denkov

In many systems consisting of interacting subsystems, the complex interactions between elements can be represented using multilayer networks. However percolation, key to understanding connectivity and robustness, is not trivially…

Disordered Systems and Neural Networks · Physics 2020-11-04 G. J. Baxter , R. A. da Costa , S. N. Dorogovtsev , J. F. F. Mendes

The optical responses of structured array of noble-metal nanoparticle dimers immersed in a glass matrix are investigated theoretically, motivated by the recent experimental observation of the splitting of the surface plasmon bands in silver…

Optics · Physics 2007-05-23 J. J. Xiao , J. P. Huang , K. W. Yu

In this paper, we explore the 3D structure of light scattering from dark-field illuminated live 3T3 cells in the presence of 40 nm gold nanomarkers. For this purpose, we use a high resolution holographic microscope combining the off-axis…

Diatomic nitrogen is an archetypal molecular system known for its exceptional stability and complex behavior at high pressures and temperatures, including rich solid polymorphism, formation of energetic states, and an insulator-to-metal…

A promising new method for measuring intramolecular distances in solution uses small-angle X-ray scattering interference between gold nanocrystal labels (Mathew-Fenn et al, Science, 322, 446 (2008)). When applied to double stranded DNA, it…

Biomolecules · Quantitative Biology 2015-05-13 Alexey K. Mazur

Engineered electromagnetic fields in plasmonic nanopores enable enhanced optical detection and their use in single molecule sequencing. Here, a plasmonic nanopore prepared in a thick nanoporous film is used to investigate the interaction…

Functionalized metal nanoparticles (NPs) have been proposed as promising radiosensitizing agents for more efficient radiotherapy treatment using photons and ion beams. Radiosensitizing properties of NPs may depend on many different…

Atomic and Molecular Clusters · Physics 2023-09-06 Alexey V. Verkhovtsev , Adam Nichols , Nigel J. Mason , Andrey V. Solov'yov

While the thermodynamics of DNA hybridization is well understood, much less is known about the kinetics of this classic system. Filling this gap in our understanding has new urgency because DNA nanotechnology often depends critically on…

Soft Condensed Matter · Physics 2013-10-28 Thomas E. Ouldridge , Petr Šulc , Flavio Romano , Jonathan P. K. Doye , Ard A. Louis

A double percolation transition is identified in a binary network composed of nanoparticles of magnesium diborade superconductor and chromium oxide half-metallic ferromagnet. Anomalously high-resistance or insulating state, as compared to…

Mesoscale and Nanoscale Physics · Physics 2015-05-13 Xiangdong Liu , Raghava P. Panguluri , Zhi-Feng Huang , Boris Nadgorny

The linking number (topological entanglement) and the writhe (geometrical entanglement) of a model of circular double stranded DNA undergoing a thermal denaturation transition are investigated by Monte Carlo simulations. By allowing the…

Statistical Mechanics · Physics 2007-05-23 M. Baiesi , E. Orlandini , A. L. Stella

In this work we present a computational study of the Kinetoplast genome, modelled as a large number of semiflexible unknotted loops, which are allowed to link with each other. As the DNA density increases, the systems shows a percolation…

Soft Condensed Matter · Physics 2015-05-15 Davide Michieletto , Davide Marenduzzo , Enzo Orlandini

We discern hydration geometries around the sugar-phosphate-backbone of an RNA double helix at the molecular level. RNA disordering upon melting is connected with a transition from ordered water structures towards local phosphate group…

Chemical Physics · Physics 2021-09-02 Benjamin P. Fingerhut , Achintya Kundu , Jakob Schauss , Thomas Elsaesser

Scaling down materials to an atomic-layer level produces rich physical and chemical properties as exemplified in various two-dimensional (2D) crystals extending from graphene, transition metal dichalcogenides to black phosphorous. This is…

Materials Science · Physics 2016-03-28 Masaro Yoshida , Ryuji Suzuki , Yijin Zhang , Masaki Nakano , Yoshihiro Iwasa

We propose a new statistical mechanics model for the melting transition of DNA. Base pairing and stacking are treated as separate degrees of freedom, and the interplay between pairing and stacking is described by a set of local rules which…

Soft Condensed Matter · Physics 2007-05-23 Vassili Ivanov , Dmitri Piontkovski , Giovanni Zocchi