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Identification of taxa can significantly be assisted by statistical classification based on trait measurements in two major ways; either individually or by phylogenetic (clustering) methods. In this paper we present a general Bayesian…

Applications · Statistics 2021-09-17 Måns Karlsson , Ola Hössjer

We study a model of flocking in order to describe the transitions during the collective motion of organisms in three dimensions (e.g., birds). In this model the particles representing the organisms are self-propelled, i.e., they move with…

Biological Physics · Physics 2015-06-26 A. Czirok , M. Vicsek , T. Vicsek

The inheritance of characteristics induced by the environment has often been opposed to the theory of evolution by natural selection. Yet, while evolution by natural selection requires new heritable traits to be produced and transmitted, it…

Populations and Evolution · Quantitative Biology 2015-06-18 Olivier Rivoire , Stanislas Leibler

Learning processes by exploiting restricted domain knowledge is an important task across a plethora of scientific areas, with more and more hybrid training methods additively combining data-driven and model-based approaches. Although the…

Machine Learning · Computer Science 2025-01-17 Yann Claes , Vân Anh Huynh-Thu , Pierre Geurts

We study an individual-based model in which two spatially-distributed species, characterized by different diffusivities, compete for resources. We consider three different ecological settings. In the first, diffusing faster has a cost in…

Populations and Evolution · Quantitative Biology 2016-01-27 Simone Pigolotti , Roberto Benzi

Starting from recent experimental observations of starlings and jackdaws, we propose a minimal agent-based mathematical model for bird flocks based on a system of second-order delayed stochastic differential equations with discontinuous…

Adaptation and Self-Organizing Systems · Physics 2021-10-08 Emiliano Cristiani , Marta Menci , Marco Papi , Léonard Brafman

We present a Stackelberg game model to investigate how individuals make their decisions on timing and route selection. Group formation can naturally result from these decisions, but only when individuals arrive at the same time and choose…

Computer Science and Game Theory · Computer Science 2025-08-26 Chenlan Wang , Mingyan Liu

Biological systems like long-lived clonal organisms, holobionts and clades challenge traditional evolutionary thinking since they adapt without populations or reproduction. This paper aims to provide an overarching theoretical framework…

Populations and Evolution · Quantitative Biology 2026-02-25 Rudy Arthur

Animal sounds can be recognised automatically by machine learning, and this has an important role to play in biodiversity monitoring. Yet despite increasingly impressive capabilities, bioacoustic species classifiers still exhibit imbalanced…

We suggest a novel approach to treating symbiotic relations between biological species or social entities. The main idea is the characterisation of symbiotic relations of coexisting species through their mutual influence on their respective…

Populations and Evolution · Quantitative Biology 2015-06-22 V. I. Yukalov , E. P. Yukalova , D. Sornette

We present a general framework for modeling a wide selection of flocking scenarios under free boundary conditions. Several variants have been considered - including examples for the widely observed behavior of hierarchically interacting…

Physics and Society · Physics 2019-04-23 Yongnan Jia , Tamas Vicsek

Animals form groups for many reasons but there are costs and benefit associated with group formation. One of the benefits is collective memory. In groups on the move, social interactions play a crucial role in the cohesion and the ability…

Quantitative Methods · Quantitative Biology 2014-03-24 Giancarlo De Luca , Patrizio Mariani , Brian R. MacKenzie , Matteo Marsili

A large part of the interest in model-based reinforcement learning derives from the potential utility to acquire a forward model capable of strategic long term decision making. Assuming that an agent succeeds in learning a useful predictive…

Machine Learning · Computer Science 2021-06-29 Alvaro Ovalle , Simon M. Lucas

This paper argues that continual learning methods can benefit by splitting the capacity of the learner across multiple models. We use statistical learning theory and experimental analysis to show how multiple tasks can interact with each…

Machine Learning · Computer Science 2024-05-07 Rahul Ramesh , Pratik Chaudhari

A generalized seasonally-varying predator-prey model with Allee effect in the prey growth is investigated. The analysis is performed only on the basis of some properties determining the shape of the prey growth rate and the trophic…

Dynamical Systems · Mathematics 2019-09-06 Carlota Rebelo , Cinzia Soresina

Hybrid modeling aims to augment traditional theory-driven models with machine learning components that learn unknown parameters, sub-models or correction terms from data. In this work, we build on FluxRGNN, a recently developed hybrid model…

Machine Learning · Computer Science 2024-08-09 Fiona Lippert , Bart Kranstauber , Patrick Forré , E. Emiel van Loon

Different evolutionary models are known to make disparate predictions for the success of an invading mutant in some situations. For example, some evolutionary mechanics lead to amplification of selection in structured populations, while…

Populations and Evolution · Quantitative Biology 2020-07-01 Francisco Herrerías-Azcué , Vicente Pérez-Muñuzuri , Tobias Galla

In nature self-organized systems as flock of birds, school of fishes or herd of sheeps have to deal with the presence of external agents such as predators or leaders which modify their internal dynamic. Such situations take into account a…

Biological Physics · Physics 2012-10-15 Giacomo Albi , Lorenzo Pareschi

Social animals have to take into consideration the behaviour of conspecifics when making decisions to go by their daily lives. These decisions affect their fitness and there is therefore an evolutionary pressure to try making the right…

Populations and Evolution · Quantitative Biology 2009-03-09 David Lusseau

Developing reliable mechanisms for continuous local learning is a central challenge faced by biological and artificial systems. Yet, how the environmental factors and structural constraints on the learning network influence the optimal…

Neurons and Cognition · Quantitative Biology 2024-03-21 Emmanouil Giannakakis , Sina Khajehabdollahi , Anna Levina
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