Related papers: Geometry of the Kimura 3-parameter model
It is shown that, classically, the W-algebras are directly related to the extrinsic geometry of the embedding of two-dimensional manifolds with chiral parametrisation (W-surfaces) into higher dimensional K\"ahler manifolds. We study the…
Given a positive singular hermitian metric of a pseudoeffective line bundle on a complex Kaehler manifold, a singular foliation is constructed satisfying certain analytic analogues of numerical conditions. This foliation refines Tsuji's…
In this paper we study the geometry of good reductions of Shimura varieties of abelian type. More precisely, we construct the Newton stratification, Ekedahl-Oort stratification, and central leaves on the special fiber of a Shimura variety…
Given a nondegenerate ternary form $f=f(x_1,x_2,x_3)$ of degree 4 over an algebraically closed field of characteristic zero, we use the geometry of K3 surfaces to construct a certain positive-dimensional family of irreducible…
Motivated by potential phenomenological applications, we develop the necessary tools for building GUT models in F-theory. This approach is quite flexible because the local geometrical properties of singularities in F-theory…
We classify surjective self-maps (of degree at least two) of affine surfaces according to the log Kodaira dimension.
The classical Fundamental Theorem of Affine Geometry states that for $n\geq 2$, any bijection of $n$-dimensional Euclidean space that maps lines to lines (as sets) is given by an affine map. We consider an analogous characterization of…
For K\"ahler K3 surfaces we consider Kulikov models of type III tamed by a symplectic form. Our main result shows that the generic smooth fiber admits an almost toric fibration over the intersection complex, which inherits a natural nodal…
We introduce K3 transitions as a geometric approach to studying canonical 3-folds. These transitions link different deformation classes of canonical 3-folds via a combination of birational contractions and smoothings. As applications, we…
Evolutionary relationships between species are represented by phylogenetic trees, but these relationships are subject to uncertainty due to the random nature of evolution. A geometry for the space of phylogenetic trees is necessary in order…
Identifiability of phylogenetic models is a necessary condition to ensure that the model parameters can be uniquely determined from data. Mixture models are phylogenetic models where the probability distributions in the model are convex…
We explain the observation by Candelas and Font that the Dynkin diagrams of nonabelian gauge groups occurring in type IIA and F-theory can be read off from the polyhedron $\Delta^*$ that provides the toric description of the Calabi-Yau…
This is the unabridged web version of the paper that will be published on the American Journal of Mathematics. In this paper, we study the birational geometry of certain examples of mildly singular quartic 3-folds. A quartic 3-fold is an…
The paper studies intrinsic geometry in the tropical plane. Tropical structure in the real affine $n$-space is determined by the integer tangent vectors. Tropical isomorphisms are affine transformations preserving the integer lattice of the…
Let f:X->Y be an algebraic fiber space such that the general fiber has a good minimal model. We show that if f is the Iitaka fibration or if f is the Albanese map of relative dimension no more than three, then X has a good minimal model.
In this paper we study group-based Markov models of evolution and their mixtures. In the algebreo-geometric setting, group-based phylogenetic tree models correspond to toric varieties, while their mixtures correspond to secant and join…
A basic problem in the study of algebraic morphisms is to determine which sets can be realised as the image of an endomorphism of affine space. This paper extends the results previously obtained by the first author on the question of…
We present a systematic study of threefolds fibred by K3 surfaces that are mirror to sextic double planes. There are many parallels between this theory and the theory of elliptic surfaces. We show that the geometry of such threefolds is…
In this paper we adapt some techniques developed for K3 surfaces, to study the geometry of a family of projective varieties in $\Pl_K^2 \times \Pl_K^2 \times \Pl_K^2$ defined as the intersection of a form of degree $(2,2,2)$ and a form of…
Null models of binary phylogenetic trees are useful for testing hypotheses on real world phylogenies. In this paper we consider phylogenies as binary trees without edge lengths together with a sampling measure and encode them as algebraic…