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The study of good nonregular fractional factorial designs has received significant attention over the last two decades. Recent research indicates that designs constructed from quaternary codes (QC) are very promising in this regard. The…

Statistics Theory · Mathematics 2013-02-28 Frederick K. H. Phoa

RNA design aims to find a sequence that folds with highest probability into a designated target structure. However, certain structures are undesignable, meaning no sequence can fold into the target structure under the default (Turner) RNA…

Data Structures and Algorithms · Computer Science 2025-05-06 Tianshuo Zhou , Wei Yu Tang , Apoorv Malik , David H. Mathews , Liang Huang

Orthogonal Fractional Factorial Designs and in particular Orthogonal Arrays are frequently used in many fields of application, including medicine, engineering and agriculture. In this paper we present a methodology and an algorithm to find…

Methodology · Statistics 2015-01-15 Roberto Fontana

We consider the inverse-folding problem for RNA secondary structures: for a given (pseudo-knot-free) secondary structure find a sequence that has that structure as its ground state. If such a sequence exists, the structure is called…

Biological Physics · Physics 2015-06-26 Bernd Burghardt , Alexander K. Hartmann

Strong blocking sets and their counterparts, minimal codes, attracted lots of attention in the last years. Combining the concatenating construction of codes with a geometric insight into the minimality condition, we explicitly provide…

Combinatorics · Mathematics 2023-01-24 Daniele Bartoli , Martino Borello

Given a two-level regular fractional factorial design of resolution IV, the method of doubling produces another design of resolution IV which doubles both the run size and the number of factors of the initial design. On the other hand, the…

Statistics Theory · Mathematics 2007-06-13 Hegang H. Chen , Ching-Shui Cheng

Quaternary code (QC) designs form an attractive class of nonregular factorial fractions. We develop a complementary set theory for characterizing optimal QC designs that are highly fractionated in the sense of accommodating a large number…

Statistics Theory · Mathematics 2013-12-19 Rahul Mukerjee , Boxin Tang

We examine an error-correcting coding framework in which each coded symbol is constrained to be a function of a fixed subset of the message symbols. With an eye toward distributed storage applications, we seek to design systematic codes…

Information Theory · Computer Science 2015-02-23 Wael Halbawi , Matthew Thill , Babak Hassibi

An {\em $m\times n$ row-column factorial design} is an arrangement of the elements of a factorial design into a rectangular array. Such an array is used in experimental design, where the rows and columns can act as blocking factors. If for…

Statistics Theory · Mathematics 2021-01-18 Fahim Rahim , Nicholas Cavenagh

Minimal rank-metric codes or, equivalently, linear cutting blocking sets are characterized in terms of the second generalized rank weight, via their connection with evasiveness properties of the associated $q$-system. Using this result, we…

Combinatorics · Mathematics 2022-09-07 Daniele Bartoli , Giuseppe Marino , Alessandro Neri

We consider the problem of coded distributed computing where a large linear computational job, such as a matrix multiplication, is divided into $k$ smaller tasks, encoded using an $(n,k)$ linear code, and performed over $n$ distributed…

Information Theory · Computer Science 2021-10-06 Mahdi Soleymani , Mohammad Vahid Jamali , Hessam Mahdavifar

We consider the distributed computing problem of multiplying a set of vectors with a matrix. For this scenario, Li et al. recently presented a unified coding framework and showed a fundamental tradeoff between computational delay and…

Information Theory · Computer Science 2017-09-19 Albin Severinson , Alexandre Graell i Amat , Eirik Rosnes

Statistical design of experiments is widely used in scientific and industrial investigations. A generalized minimum aberration (GMA) orthogonal array is optimum under the well-established, so-called GMA criterion, and such an array can…

Computation · Statistics 2021-04-27 Dursun A. Bulutoglu , Kenneth J. Ryan

This paper concerns non-overlapping codes, block codes motivated by synchronisation and DNA-based storage applications. Most existing constructions of these codes do not account for the restrictions posed by the physical properties of…

Information Theory · Computer Science 2025-02-05 Lidija Stanovnik , Miha Moškon , Miha Mraz

Partial spread is important in finite geometry and can be used to construct linear codes. From the results in (Designs, Codes and Cryptography 90:1-15, 2022) by Xia Li, Qin Yue and Deng Tang, we know that if the number of the elements in a…

Information Theory · Computer Science 2023-05-10 W. Lu , X. Wu , X. W. Cao , G. J. Luo , X. P. Qin

The design of block codes for short information blocks (e.g., a thousand or less information bits) is an open research problem which is gaining relevance thanks to emerging applications in wireless communication networks. In this work, we…

Information Theory · Computer Science 2016-10-05 Gianluigi Liva , Lorenzo Gaudio , Tudor Ninacs , Thomas Jerkovits

In this paper, we first study in detail the relationship between minimal linear codes and cutting blocking sets, which were recently introduced by Bonini and Borello, and then completely characterize minimal linear codes as cutting blocking…

Information Theory · Computer Science 2020-04-28 Chunming Tang , Yan Qiu , Qunying Liao , Zhengchun Zhou

We develop a method to design tunable quasiperiodic structures of particles suspended in a fluid by controlling standing acoustic waves. One application of our results is to ultrasound directed self-assembly, which allows fabricating…

Analysis of PDEs · Mathematics 2024-09-20 Elena Cherkaev , Fernando Guevara Vasquez , China Mauck

Algebraic methods for the design of series of maximum distance separable (MDS) linear block and convolutional codes to required specifications and types are presented. Algorithms are given to design codes to required rate and required…

Information Theory · Computer Science 2022-07-14 Ted Hurley

This paper proposes a novel maximum-likelihood (ML) soft-decision decoding framework for linear block codes, termed error-building decoding (EBD). The complete decoding process can be performed using only the parity-check matrix, without…

Information Theory · Computer Science 2026-01-06 Guoda Qiu , Ling Liu , Yuejun Wei , Liping Li