Related papers: On phylogenetic trees - a geometer's view

Phylogenetic trees are leaf-labelled trees, where the leaves correspond to extant species (taxa), and the internal vertices represent ancestral species. The evolutionary history of a set of species can be explained by more than one…

In this paper, we propose a conjecture that clarifies the relationship between the number of degree d elliptic curves in complex four-dimensional projective Fano hypersurfaces and their degree d elliptic Gromov-Witten (GW) invariants. The…

Using generating functions techniques we develop a relation between the Hausdorff and spectral dimension of trees with a unique infinite spine. Furthermore, it is shown that if the outgrowths along the spine are independent and identically…

The paper concerns discrete versions of the three well-known results of projective differential geometry: the four vertex theorem, the six affine vertex theorem and the Ghys theorem on four zeroes of the Schwarzian derivative. We study…

A classical result of Bondal-Orlov states that a standard flip in birational geometry gives rise to a fully faithful functor between derived categories of coherent sheaves. We complete their embedding into a semiorthogonal decomposition by…

We find presentations for subalgebras of invariants of the coordinate algebras of binary symmetric models of phylogenetic trees studied by Buczynska and Wisniewski in \cite{BW}. These algebras arise as toric degenerations of rings of global…

A phylogenetic tree is a graphical representation of an evolutionary history of taxa in which the leaves correspond to the taxa and the non-leaves correspond to speciations. One of important problems in phylogenetic analysis is to assemble…

We prove that a smooth projective variety $X$ of dimension $n$ with strictly nef third, fourth or $(n-1)$-th exterior power of the tangent bundle is a Fano variety. Moreover, in the first two cases, we provide a classification for $X$ under…

Let $X$ be a minimal projective Gorenstein 3-fold of general type. We give two applications of an inequality between $\chi (\omega_X)$ and $p_g(X)$: 1) Assume that the canonical map $\Phi_{|K_X|}$ is of fiber type. Let $F$ be a smooth model…

Phylogenetic invariants are equations that vanish on algebraic varieties associated with Markov processes that model molecular substitutions on phylogenetic trees. For practical applications, it is essential to understand these equations…

We explicitly fully describe the K-moduli space of Fano threefold family number 3.3. We first show that K-semistable Fano varieties with volume greater than 18 are Gorenstein canonical and admit general elephants, decreasing the bound on a…

We classify Fano 3-folds with canonical Gorenstein singularities whose anticanonical linear system has no base points but does not give an embedding, and we classify anticanonically embedded Fano 3-folds with canonical Gorenstein…

We construct several new families of Fano varieties of K3 type. We give a geometrical explanation of the K3 structure and we link some of them to projective families of irreducible holomorphic symplectic manifolds.

Let F be a polarized irreducible holomorphic symplectic fourfold, deformation equivalent to the Hilbert scheme parametrizing length-two zero-dimensional subschemes of a K3 surface. The homology group H^2(F,Z) is equipped with an integral…

We compare three basic kinds of discrete mathematical models used to portray phylogenetic relationships among species and higher taxa: phylogenetic trees, Hennig trees and Nelson cladograms. All three models are trees, as that term is…

We study complex projective manifolds X that admit surjective endomorphisms f:X->X of degree at least two. In case f is etale, we prove structure theorems that describe X. In particular, a rather detailed description is given if X is a…

We prove a numerical characterization of $\mathbb{P}^n$ for varieties with at worst isolated local complete intersection quotient singularities. In dimension three, we prove such a numerical characterization of $\mathbb{P}^3$ for normal…

We give a survey of the incredibly beautiful amount of geometry involved with the problem of realizing a projective variety as hyperplane section of another variety.

This paper investigates two involutions on binary trees. One is the mirror symmetry of binary trees which combined with the classical bijection $\varphi$ between binary trees and plane trees answers an open problem posed by Bai and Chen.…

This article studies germs of holomorphic vector fields at the origin of C3 that are tangent to holomorphic foliations of codimension one. Two situations are considered. First, we assume hypotheses on the reduction of singularities of the…