Related papers: Edit Distance between Unlabeled Ordered Trees
Sorting is a foundational problem in computer science that is typically employed on sequences or total orders. More recently, a more general form of sorting on partially ordered sets (or posets), where some pairs of elements are…
The editing of a combinatorial object is the alteration of some of its elements such that the resulting object satisfies a certain fixed property. The edit problem for graphs, when the edges are added or deleted, was first studied…
Codes over trees were introduced recently to bridge graph theory and coding theory with diverse applications in computer science and beyond. A central challenge lies in determining the maximum number of labelled trees over $n$ nodes with…
A fundamental problem in network science is the normalization of the topological or physical distance between vertices, that requires understanding the range of variation of the unnormalized distances. Here we investigate the limits of the…
We introduce a new concept of permutation avoidance pattern called hatted pattern, which is a natural generalization of the barred pattern. We show the growth rate of the class of permutations avoiding a hatted pattern in comparison to…
We present a near-linear time algorithm that approximates the edit distance between two strings within a polylogarithmic factor; specifically, for strings of length n and every fixed epsilon>0, it can compute a (log n)^O(1/epsilon)…
We consider uniform random permutations in proper substitution-closed classes and study their limiting behavior in the sense of permutons. The limit depends on the generating series of the simple permutations in the class. Under a mild…
We present a simple bijection between Baxter permutations of size $n$ and plane bipolar orientations with n edges. This bijection translates several classical parameters of permutations (number of ascents, right-to-left maxima,…
Motivated by the study of pattern avoidance in the context of permutations and ordered partitions, we consider the enumeration of weak-ordering chains obtained as leaves of certain restricted rooted trees. A tree of order $n$ is generated…
We study multicolour, oriented and high-dimensional discrepancies of the set of all subtrees of a tree. As our main result, we show that the $r$-colour discrepancy of the subtrees of any tree is a linear function of the number of leaves…
In the last decade a huge amount of articles has been published studying pattern avoidance on permutations. From the point of view of enumeration, typically one tries to count permutations avoiding certain patterns according to their…
In this paper, we investigate pattern avoidance of parity restricted (even or odd) Grassmannian permutations for patterns of sizes 3 and 4. We use a combination of direct counting and bijective techniques to provide recurrence relations,…
CONTEXT. Attack treesare a recommended threat modeling tool, but there is no established method to compare them. OBJECTIVE. We aim to establish a method to compare "real" attack trees, based on both the structure of the tree itself and the…
We resolve a question of Gillespie, Griffin, and Levinson that asks for a combinatorial bijection between two classes of trivalent trees, tournament trees and slide trees, that both naturally arise in the intersection theory of the moduli…
Phylogenetic networks extend phylogenetic trees to model non-vertical inheritance, by which a lineage inherits material from multiple parents. The computational complexity of estimating phylogenetic networks from genome-wide data with…
Numerical evidence suggests that certain permutation patterns of length k are easier to avoid than any other patterns of that same length. We prove that these patterns are avoided by no more than (2.25k^2)^n permutations of length n. In…
Dependency trees have proven to be a very successful model to represent the syntactic structure of sentences of human languages. In these structures, vertices are words and edges connect syntactically-dependent words. The tendency of these…
This paper provides a short and transparent solution for the covering cost of white-grey trees which play a crucial role in the algorithm of Bergeron {\it et al.}\ to compute the rearrangement distance between two multichromosomal genomes…
Given a set $Y$ of decreasing plane trees and a permutation $\pi$, how many trees in $Y$ have $\pi$ as their postorder? Using combinatorial and geometric constructions, we provide a method for answering this question for certain sets $Y$…
The reconstruction problem for permutations on $n$ elements from their erroneous patterns which are distorted by transpositions is presented in this paper. It is shown that for any $n \geq 3$ an unknown permutation is uniquely…