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We use a multitype continuous time Markov branching process model to describe the dynamics of the spread of parasites of two types that can mutate into each other in a common host population. Instead of using a single virulence…

Probability · Mathematics 2011-09-02 Konstantin Borovkov , Robert Day , Timothy Rice

Recent advances in computational power and simulation programs finally delivered the first examples of reversible folding for small proteins with an all-atom description. But having at hand the atomistic details of the process did not lead…

Biological Physics · Physics 2013-04-23 Ganna Berezovska , Diego Prada-Gracia , Francesco Rao

The Whittaker 2d growth model is a triangular continuous Markov diffusion process that appears in many scientific contexts. It has been theoretically intriguing to establish a large deviation principle for this 2d process with a scaling…

Probability · Mathematics 2020-09-29 Jun Gao , Jie Ding

We consider an epidemic model with distributed-contacts. When the contact kernel concentrates, one formally reaches a very degenerate Fisher-KPP equation with a diffusion term that is not in divergence form. We make an exhaustive study of…

Analysis of PDEs · Mathematics 2025-10-27 Matthieu Alfaro , Maxime Herda , Andrea Natale

Complex distribution networks are pervasive in biology. Examples include nutrient transport in the slime mold \emph{Physarum polycephalum} as well as mammalian and plant venation. Adaptive rules are believed to guide development of these…

Adaptation and Self-Organizing Systems · Physics 2019-12-16 Henrik Ronellenfitsch , Eleni Katifori

Mathematical and computational models can assist in gaining an understanding of cell behavior at many levels of organization. Here, we review models in the literature that focus on eukaryotic cell motility at 3 size scales: intracellular…

Cell Behavior · Quantitative Biology 2021-01-27 Andreas Buttenschön , Leah Edelstein-Keshet

Motivated by experiments on cell segregation, we present a two-species model of interacting particles, aiming at a quantitative description of this phenomenon. Under precise scaling hypothesis, we derive from the microscopic model a…

Analysis of PDEs · Mathematics 2019-06-04 J. Barré , P. Degond , D. Peurichard , E. Zatorska

Pattern forming systems allow for a wealth of states, where wavelengths and orientation of patterns varies and defects disrupt patches of monocrystalline regions. Growth of patterns has long been recognized as a strong selection mechanism.…

Pattern Formation and Solitons · Physics 2023-02-28 Ryan Goh , Arnd Scheel

During bouts of evolutionary diversification, such as adaptive radiations, the emerging species cluster around different locations in phenotype space, How such multimodal patterns in phenotype space can emerge from a single ancestral…

Populations and Evolution · Quantitative Biology 2007-11-19 Michael Doebeli , Hendrik J. Blok , Olof Leimar , Ulf Dieckmann

Consider the first passage percolation model on ${\bf Z}^d$ for $d\geq 2$. In this model we assign independently to each edge the value zero with probability $p$ and the value one with probability $1-p$. We denote by $T({\bf 0}, v)$ the…

Probability · Mathematics 2016-09-07 Yu Zhang

We have characterized the scaling behavior of the first-passage percolation (FPP) model on two types of discrete networks, the regular square lattice and the disordered Delaunay lattice, thereby addressing the effect of the underlying…

Statistical Mechanics · Physics 2018-07-09 Pedro Córdoba-Torres , Silvia N. Santalla , Rodolfo Cuerno , Javier Rodríguez-Laguna

An important component in studying mathematical models in many biochemical systems, such as those found in developmental biology, is phase transition. The purpose of this work is to analyze the phase transition property of a…

Analysis of PDEs · Mathematics 2013-12-19 Masoud Yari

Competition is one of the most fundamental phenomena in physics, biology and economics. Recent studies of the competition between innovations have highlighted the influence of switching costs and interaction networks, but the problem is…

Physics and Society · Physics 2011-01-06 Carlos P. Roca , Moez Draief , Dirk Helbing

Turing theory of pattern formation is among the most popular theoretical means to account for the variety of spatio-temporal structures observed in Nature and, for this reason, finds applications in many different fields. While Turing…

Pattern Formation and Solitons · Physics 2025-10-22 Riccardo Muolo , Luca Gallo , Vito Latora , Mattia Frasca , Timoteo Carletti

We study the first-passage time (FPT) problem for widespread recurrent processes in confined though large systems and present a comprehensive framework for characterizing the FPT distribution over many time scales. We find that the FPT…

Statistical Mechanics · Physics 2025-03-21 Talia Baravi , David A. Kessler , Eli Barkai

We consider last passage percolation (LPP) models with exponentially distributed random variables, which are linked to the totally asymmetric simple exclusion process (TASEP). The competition interface for LPP was introduced and studied by…

Mathematical Physics · Physics 2016-12-14 Patrik L. Ferrari , Peter Nejjar

We provide a short review of existing models with multiple taxis performed by (at least) one species and consider a new mathematical model for tumor invasion featuring two mutually exclusive cell phenotypes (migrating and proliferating).…

Analysis of PDEs · Mathematics 2020-05-05 Niklas Kolbe , Nikolaos Sfakianakis , Christian Stinner , Christina Surulescu , Jonas Lenz

A new kind of invasion percolation is introduced in order to take into account the inertia of the invader fluid. The inertia strength is controlled by the number N of pores (or steps) invaded after the perimeter rupture. The new model…

Statistical Mechanics · Physics 2009-10-31 Reginaldo A. Zara , Roberto N. Onody

We study the competition interface between two growing clusters in a growth model associated to last-passage percolation. When the initial unoccupied set is approximately a cone, we show that this interface has an asymptotic direction with…

Probability · Mathematics 2009-09-29 Pablo A. Ferrari , James B. Martin , Leandro P. R. Pimentel

We explore the crystallization in a colloidal monolayer on a structured template starting from a few-particle nucleus. The competition between the substrate structure and that of the growing crystal induces a new crystal growth scenario.…

Soft Condensed Matter · Physics 2013-07-09 Tim Neuhaus , Michael Schmiedeberg , Hartmut Löwen