Related papers: Subdominant matroid ultrametrics

Given a digraph $G = (V_G, A_G)$, a \emph{branching} in $G$ is a set of arcs $B \subseteq A_G$ such that the underlying undirected graph spanned by $B$ is acyclic and each node in $G$ is entered (\emph{covered}) by at most one arc from $B$.…

In this paper we consider the problem of finding the {\em densest} subset subject to {\em co-matroid constraints}. We are given a {\em monotone supermodular} set function $f$ defined over a universe $U$, and the density of a subset $S$ is…

In this paper, we introduce the concept of Density-Balanced Subset in a matroid, in which independent sets can be sampled so as to guarantee that (i) each element has the same probability to be sampled, and (ii) those events are negatively…

In analogy with the origin of the additive structure of $K$-theory, we construct an $E_\infty$ structure on the matroid Grassmannian (the space of oriented matroids) for which the underlying binary operation is the direct sum of matroids.…

Compatibility of unrooted phylogenetic trees is a well studied problem in phylogenetics. It asks to determine whether for a set of k input trees there exists a larger tree (called a supertree) that contains the topologies of all k input…

The dual graph $\Gamma(h)$ of a regular triangulation $\Sigma(h)$ carries a natural metric structure. The minimum spanning trees of $\Gamma(h)$ recently proved to be conclusive for detecting significant data signal in the context of…

UPGMA is a heuristic method identifying the least squares equidistant phylogenetic tree given empirical distance data among $n$ taxa. We study this classic algorithm using the geometry of the space of all equidistant trees with $n$ leaves,…

We study a parametric version of the Fermat-Weber problem with respect to an asymmetric distance function, which occurs naturally in tropical geometry. Our results yield a method for constructing phylogenetic supertrees.

This article is a survey of matroid theory aimed at algebraic geometers. Matroids are combinatorial abstractions of linear subspaces and hyperplane arrangements. Not all matroids come from linear subspaces; those that do are said to be…

Phylogenetic networks are a flexible model of evolution that can represent reticulate evolution and handle complex data. Tree-based networks, which are phylogenetic networks that have a spanning tree with the same root and leaf-set as the…

We prove that every infinite sequence of skew-symmetric or symmetric matrices M_1, M_2, ... over a fixed finite field must have a pair M_i, M_j (i<j) such that M_i is isomorphic to a principal submatrix of the Schur complement of a…

For an $n$-element matroid $M$ given by an $n \times n$ matrix representation over a finite field $\mathbb F$ and an integer $k$, we present an $(O_{k,\mathbb F}(n^2)+O(n^\omega))$-time algorithm that either finds a branch-decomposition of…

We study a notion of tropical linear series on metric graphs that combines two essential properties of tropicalizations of linear series on algebraic curves: the Baker-Norine rank and the independence rank. Our main results relate the local…

We obtain structure theorems for graphs excluding a fan (a path with a universal vertex) or a dipole ($K_{2,k}$) as a topological minor. The corresponding decompositions can be computed in FPT linear time. This is motivated by the study of…

Kir\'{a}ly in [On maximal independent arborescence packing, SIAM J. Discrete. Math. 30 (4) (2016), 2107-2114] solved the following packing problem: Given a digraph $D = (V, A)$, a matroid $M$ on a set $S = \{s_{1}, \ldots,s_{k} \}$ along…

Let (G,w) be a weighted graph. The necessary and sufficient conditions under which a weight w : E(G)-->R^+ can be extended to a pseudoultrametric on V(G) are found. A criterion of the uniqueness of this extension is also obtained. It is…

We explore birational geometry of matroids by investigating automorphisms of their coarse Bergman fans. Combinatorial Cremona maps provide such automorphisms of Bergman fans which are not induced by matroid automorphisms. We investigate the…

The cogirth, $g^\ast(M)$, of a matroid $M$ is the size of a smallest cocircuit of $M$. Finding the cogirth of a graphic matroid can be done in polynomial time, but Vardy showed in 1997 that it is NP-hard to find the cogirth of a binary…

Generalizing a theorem of the first two authors and Geelen for planes, we show that, for a real-representable matroid $M$, either the average hyperplane-size in $M$ is at most a constant depending only on its rank, or each hyperplane of $M$…

The tropical Stiefel map associates to a tropical matrix A its tropical Pluecker vector of maximal minors, and thus a tropical linear space L(A). We call the L(A)s obtained in this way Stiefel tropical linear spaces. We prove that they are…