Related papers: Subdominant matroid ultrametrics

A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…

We prove that the proper amalgam of matroids $M_1$ and $M_2$ along their common restriction $N$ exists if and only if the tropical fibre product of Bergman fans ${B(M_1) \times_{B(N)} B(M_2)}$ is positive. We introduce tropical…

We consider a finite-dimensional vector space $W\subset K^E$ over an arbitrary field $K$ and an arbitrary set $E$. We show that the set $C(W)\subset 2^E$ consisting of the minimal supports of $W$ are the circuits of a matroid on $E$. In…

We show that a field extension $K\subseteq L$ in positive characteristic $p$ and elements $x_e\in L$ for $e\in E$ gives rise to a matroid $M^\sigma$ on ground set $E$ with coefficients in a certain skew hyperfield $L^\sigma$. This skew…

Ultrametric matrices are a class of covariance matrices that arise in latent tree models. As a parameter space in a statistical model, the set of ultrametric matrices is neither convex nor a smooth manifold. Focus in the literature has…

Ultametrics are an important class of distances used in applications such as phylogenetics, clustering and classification theory. Ultrametrics are essentially distances that can be represented by an edge-weighted rooted tree so that all of…

We study the fan structure of Dressians $\Dr(d,n)$ and local Dressians $\Dr(\cM)$ for a given matroid $\cM$. In particular we show that the fan structure on $\Dr(\cM)$ given by the three term Pl\"ucker relations coincides with the structure…

Consider a finite set $E$. Assume that each $e \in E$ has a "weight" $w \left(e\right) \in \mathbb{R}$ assigned to it, and any two distinct $e, f \in E$ have a "distance" $d \left(e, f\right) = d \left(f, e\right) \in \mathbb{R}$ assigned…

Motivated by applications to low-rank matrix completion, we give a combinatorial characterization of the independent sets in the algebraic matroid associated to the collection of $m\times n$ rank-2 matrices and $n\times n$ skew-symmetric…

The Lagrangian geometry of matroids was introduced in [ADH20] through the construction of the conormal fan of a matroid M. We used the conormal fan to give a Lagrangian-geometric interpretation of the h-vector of the broken circuit complex…

Distance-based phylogenetic algorithms attempt to solve the NP-hard least squares phylogeny problem by mapping an arbitrary dissimilarity map representing biological data to a tree metric. The set of all dissimilarity maps is a Euclidean…

In this paper, we introduce the problem of Matroid-Constrained Vertex Cover: given a graph with weights on the edges and a matroid imposed on the vertices, our problem is to choose a subset of vertices that is independent in the matroid,…

We undertake a combinatorial study of the piecewise linear map g : R^{2m+2n} --> R^{mn} which assigns to the four vectors a, A in R^m and b, B in R^n the m by n matrix given by g_{ij} = min (a_i + b_j, A_i+B_j). This map arises naturally in…

Let Pi: M -> B be an onto maximal rank map or a Riemannian submersion between Riemannian manifolds M and B. Initially, we prove necessary and sufficient conditions for any fiber F to be roughly isometric to M. Then, we prove necessary and…

A vertex of a plane digraph is bimodal if all its incoming edges (and hence all its outgoing edges) are consecutive in the cyclic order around it. A plane digraph is bimodal if all its vertices are bimodal. Bimodality is at the heart of…

Every tropical ideal in the sense of Maclagan-Rinc\'on has an associated tropical variety, a finite polyhedral complex equipped with positive integral weights on its maximal cells. This leads to the realisability question, ubiquitous in…

DeVos, Kwon, and Oum introduced the concept of branch-depth of matroids as a natural analogue of tree-depth of graphs. They conjectured that a matroid of sufficiently large branch-depth contains the uniform matroid $U_{n,2n}$ or the cycle…

We relate the notion of matroid pathwidth to the minimum trellis state-complexity (which we term trellis-width) of a linear code, and to the pathwidth of a graph. By reducing from the problem of computing the pathwidth of a graph, we show…

This paper introduces Dirichlet matroids, a generalization of graphic matroids arising from electrical networks. We present four main theorems. First, we exhibit a matroid quotient involving geometric duals of networks embedded in surfaces…

A matroid $M$ is an ordered pair $(E,I)$, where $E$ is a finite set called the ground set and a collection $I\subset 2^{E}$ called the independent sets which satisfy the conditions: (i) $\emptyset \in I$, (ii) $I'\subset I \in I$ implies…