Related papers: Expected length of the longest common subsequence …

Let $R(n)$ denote the number of rich words of length $n$ over a given finite alphabet. In 2017 it was proved that $\lim_{n\rightarrow\infty} \sqrt[n]{R(n)}=1$; it means the number of rich words has a subexponential growth. However, up to…

The equidistant subsequence pattern matching problem is considered. Given a pattern string $P$ and a text string $T$, we say that $P$ is an \emph{equidistant subsequence} of $T$ if $P$ is a subsequence of the text such that consecutive…

The k-spectrum of a string is the set of all distinct substrings of length k occurring in the string. K-spectra have many applications in bioinformatics including pseudoalignment and genome assembly. The Spectral Burrows-Wheeler Transform…

In [GM] Guibert and Mansour studied involutions on n letters avoiding (or containing exactly once) 132 and avoiding (or containing exactly once) an arbitrary pattern on k letters. They also established a bijection between 132-avoiding…

We prove a precise formula for the minimal number K(n) such that every binary word of length $n$ can be divided into K(n) palindromes. Also we estimate the average number $\ol K(n)$ of palindromes composing a random binary word of the…

A pattern is encountered in a word if some infix of the word is the image of the pattern under some non-erasing morphism. A pattern $p$ is unavoidable if, over every finite alphabet, every sufficiently long word encounters $p$. A theorem by…

We give a new characterization of maximal repetitions (or runs) in strings based on Lyndon words. The characterization leads to a proof of what was known as the "runs" conjecture (Kolpakov \& Kucherov (FOCS '99)), which states that the…

Let $S_n$ denote the set of permutations of $[n]$ and let $\sigma=\sigma_1\cdots\sigma_n\in S_n$. For a subsequence $\{\sigma_{i_j}\}_{j=1}^k$ of $\{\sigma_i\}_{i=1}^n$ of length $k\ge2$, construct the ``up/down'' sequence $V_1\cdots…

The avoidability, or unavoidability of patterns in words over finite alphabets has been studied extensively. A word (pattern) over a finite set is said to be unavoidable if, for all but finitely many words, there exists a morphism mapping…

For every $n\geq 27$, we show that the number of $n/(n-1)^+$-free words (i.e., threshold words) of length $k$ on $n$ letters grows exponentially in $k$. This settles all but finitely many cases of a conjecture of Ochem.

The length $a(n)$ of the longest common subsequence of the $n$'th Thue-Morse word and its bitwise complement is studied. An open problem suggested by Jean Berstel in 2006 is to find a formula for $a(n)$. In this paper we prove new lower…

Zipf's law of abbreviation, the tendency of more frequent words to be shorter, is one of the most solid candidates for a linguistic universal, in the sense that it has the potential for being exceptionless or with a number of exceptions…

We study the space requirements of a sorting algorithm where only items that at the end will be adjacent are kept together. This is equivalent to the following combinatorial problem: Consider a string of fixed length n that starts as a…

We study the entropy $S$ of longest increasing subsequences (LIS), i.e., the logarithm of the number of distinct LIS. We consider two ensembles of sequences, namely random permutations of integers and sequences drawn i.i.d.\ from a limited…

A regular continuant is the denominator $K$ of a terminating regular continued fraction, interpreted as a function of the partial quotients. We regard $K$ as a function defined on the set of all finite words on the alphabet $1<2<3<\dots$…

Various approaches to alignment-free sequence comparison are based on the length of exact or inexact word matches between two input sequences. Haubold {\em et al.} (2009) showed how the average number of substitutions between two DNA…

For a linear code $C$ of length $n$ with dimension $k$ and minimum distance $d$, it is desirable that the quantity $kd/n$ is large. Given an arbitrary field $\mathbb{F}$, we introduce a novel, but elementary, construction that produces a…

A word~$w$ has a border $u$ if $u$ is a non-empty proper prefix and suffix of $u$. A word~$w$ is said to be \emph{closed} if $w$ is of length at most $1$ or if $w$ has a border that occurs exactly twice in $w$. A word~$w$ is said to be…

If p is the probability of a letter of a memoryless source, the length l of the corresponding binary Huffman codeword can be very different from the value -log p. We show that, nevertheless, for a typical letter, l is approximately equal to…

Finding the length of the longest increasing subsequence (LIS) is a classic algorithmic problem. Let $n$ denote the size of the array. Simple $O(n\log n)$ algorithms are known for this problem. We develop a polylogarithmic time randomized…