Related papers: Unlinked Embedded Graphs
The presence of slipknots in configurations of proteins and DNA has been shown to affect their functionality, or alter it entirely. Historically, polymers are modeled as polygonal chains in space. As an alternative to space curves, we…
Twisted graph diagrams are virtual graph diagrams with bars on edges. A bijection between abstract graph diagrams and twisted graph diagrams is constructed. Then a polynomial invariant of Yamada-type is developed which provides a lower…
We introduce a framework to analyze knots and links in an unmarked solid torus. We discuss invariants that detect when such links are equivalent under an ambient homeomorphism, and show that the multivariable Alexander polynomial is such in…
We construct geometrically two universal link invariants: universal ADO invariant and universal Jones invariant, as limits of invariants given by graded intersections in configuration spaces. More specifically, for a fixed level $\mathscr…
We introduce an unsupervised graph embedding that trades off local node similarity and connectivity, and global structure. The embedding is based on a generalized graph Laplacian, whose eigenvectors compactly capture both network structure…
We present a new link invariant which depends on a representation of the link group in SO(3). The computer calculations indicate that an abelian version of this invariant is expressed in terms of the Alexander polynomial of the link. On the…
We exhibit several families of planar graphs that are minor-minimal intrinsically spherical $3$-linked. A graph is intrinsically spherical 3-linked if it is planar graph that has, in every spherical embedding, a non-split 3-link consisting…
This paper presents primarily two Euclidean embeddings of the quotient space generated by matrices that are identified modulo arbitrary row permutations. The original application is in deep learning on graphs where the learning task is…
We introduce stable equivalence classes of oriented links in orientable three-manifolds that are orientation $I$-bundles over closed but not necessarily orientable surfaces. We call these twisted links, and show that they subsume the…
Knots are fascinating topological structures that have been observed in various contexts, ranging from micro-worlds to macro-systems, and are conjectured to play a fundamental role in their respective fields. In order to characterize their…
Measuring the entanglement complexity of collections of open curves in 3-space has been an intractable, yet pressing mathematical problem, relevant to a plethora of physical systems, such as in polymers and biopolymers. In this manuscript,…
The $\Upsilon$ invariant is a concordance invariant defined by using knot Floer homology. F\"{o}ldv\'{a}ri gives a combinatorial restructure of it using grid homology. We extend the combinatorial $\Upsilon$ invariant for balanced spatial…
A knot is an an embedding of a circle into three-dimensional space. We say that a knot is unknotted if there is an ambient isotopy of the embedding to a standard circle. By representing knots via planar diagrams, we discuss the problem of…
In this paper we introduce a Jones-type invariant for singular knots, using a Markov trace on the Yokonuma--Hecke algebras ${\rm Y}_{d,n}(u)$ and the theory of singular braids. The Yokonuma--Hecke algebras have a natural topological…
We follow up on previous work which found that commonly used graph evolution moves lead to conserved quantities that can be expressed in terms of the braiding of the graph in its embedding space. We study non-embedded graphs under three…
Oriented ribbon graphs (dessins d'enfant) are graphs embedded in oriented surfaces. A quasi-tree of a ribbon graph is a spanning subgraph with one face, which is described by an ordered chord diagram. We show that for any link diagram $L$,…
In this article, we introduce rack invariants of oriented Legendrian knots in the 3-dimensional Euclidean space endowed with the standard contact structure, which we call Legendrian racks. These invariants form a generalization of the…
The present paper is a review of the current state of Graph-Link Theory (graph-links are also closely related to homotopy classes of looped interlacement graphs), dealing with a generalisation of knots obtained by translating the…
Tied links and the tied braid monoid were introduced recently by the authors and used to define new invariants for classical links. Here, we give a version purely algebraic-combinatoric of tied links. With this new version we prove that the…
Learning low-dimensional embeddings of knowledge graphs is a powerful approach used to predict unobserved or missing edges between entities. However, an open challenge in this area is developing techniques that can go beyond simple edge…