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The conception of multi-alphabetical genetics is represented. Matrix forms of the representation of the multi-level system of molecular-genetic alphabets have revealed algebraic properties of this system. These properties are connected with…

Other Quantitative Biology · Quantitative Biology 2013-01-18 Sergey V. Petoukhov

Matrix forms of the representation of the multi-level system of molecular-genetic alphabets have revealed algebraic properties of this system. Families of genetic (4*4)- and (8*8)-matrices show unexpected connections of the genetic system…

Other Quantitative Biology · Quantitative Biology 2016-07-18 Sergey V. Petoukhov

Modelising the translation errors by suitable mathematical operators in the crystal basis model of the genetic code and requiring that codons prone to be misread encode the same amino-acid, the main features of the organisation in…

Mathematical Physics · Physics 2007-05-23 A. Sciarrino

In this paper, we introduce the representation theory of $\delta$-Hom-Jordan Lie conformal superalgebras and discuss the cases of adjoint representations. Furthermore, we develop the cohomology theory of Hom-Lie conformal superalgebras and…

Rings and Algebras · Mathematics 2018-12-21 Shuangjian Guo , Shengxiang Wang

All results concern characteristic 2. Two procedures that to every simple Lie algebra assign simple Lie superalgebras, most of the latter new, are offered. We prove that every simple finite-dimensional Lie superalgebra is obtained as the…

Representation Theory · Mathematics 2024-09-16 Sofiane Bouarroudj , Alexei Lebedev , Dimitry Leites , Irina Shchepochkina

A hypothesis of the evolution of the genetic code is proposed, the leading mechanism of which is the nucleotide spontaneous damage leading to AT-enrichment of the genome. The hypothesis accounts for stability of the genetic code towards…

Biomolecules · Quantitative Biology 2008-05-06 Denis A. Semenov

We introduce an infinite-dimensional Lie superalgebra which is an extension of the U-duality Lie algebra of maximal supergravity in D dimensions, for D between 3 and 7. The level decomposition with respect to the U-duality Lie algebra gives…

High Energy Physics - Theory · Physics 2014-02-18 Jakob Palmkvist

Using the shape space of codons and tRNAs we give a physical description of the genetic code evolution on the basis of the codon capture and ambiguous intermediate scenarios in a consistent manner. In the lowest dimensional version of our…

Genomics · Quantitative Biology 2011-10-25 Tatsuro Yamashita , Osamu Narikiyo

In this paper, we introduce a representation theory of Hom-Lie conformal superalgebras and discuss the cases of adjoint representations. Furthermore, we develop cohomology theory of Hom-Lie conformal superalgebras and discuss some…

Rings and Algebras · Mathematics 2018-07-11 Shuangjian Guo , Lihong Dong , Shengxiang Wang

In this paper, various polynomial representations of strange classical Lie superalgebras are investigated. It turns out that the representations for the algebras of type P are indecomposable, and we obtain the composition series of the…

Representation Theory · Mathematics 2010-01-21 Cuiling Luo

In this review article, first we give the concrete formulas of representations and cohomologies of associative algebras, Lie algebras, pre-Lie algebras, Leibniz algebras and 3-Lie algebras and some of their strong homotopy analogues. Then…

Rings and Algebras · Mathematics 2021-01-25 Ai Guan , Andrey Lazarev , Yunhe Sheng , Rong Tang

The off-shell representation theory of 4D, $\mathcal{N}=1$ supermultiplets can be categorized in terms of distinct irreducible graphical representations called adinkras as part of a larger effort we call supersymmetry `genomics.' Recent…

High Energy Physics - Theory · Physics 2019-03-12 Isaac Chappell , S. James Gates, , William D. Linch , James Parker , Stephen Randall , Alexander Ridgway , Kory Stiffler

We introduce the notion of a generalized representation of a Jordan algebra with unit. The greneralized representation has the following properties: (1) Usual representations and Jacobson representations correspond to special cases of…

Representation Theory · Mathematics 2007-05-23 Issai Kantor , Gregory Shpiz

We give necessary conditions for the existence of degenerations between two complex Lie superalgebras of dimension $(m,n)$. As an application, we study the variety $\mathcal{LS}^{(2,2)}$ of complex Lie superalgebras of dimension $(2,2)$.…

Rings and Algebras · Mathematics 2018-02-27 María Alejandra Alvarez , Isabel Hernández

Rich information on the prebiotic evolution is still stored in contemporary genomic data. The statistical mechanism at the sequence level may play a significant role in the prebiotic evolution. Based on statistical analysis of genome…

Other Quantitative Biology · Quantitative Biology 2018-07-12 Dirson Jian Li

Through the theory of Lie bi-algebroids and generalized complex structures, one could define a cohomology theory naturally associated to a holomorphic Poisson structure. It is known that it is the hypercohomology of a bi-complex such that…

Differential Geometry · Mathematics 2016-11-29 Yat Sun Poon

The number of atoms in the four ribonucleotides uridine monophosphate, cytidine monophosphate, adenine monophosphate and guanine monophosphate is taken as a key parameter. A mathematical relation describing the condensation of the three…

Other Quantitative Biology · Quantitative Biology 2014-06-25 Tidjani Negadi

The genetic code refers to a rule that maps 64 codons to 20 amino acids. Nearly all organisms, with few exceptions, share the same genetic code, the standard genetic code (SGC). While it remains unclear why this universal code has arisen…

Populations and Evolution · Quantitative Biology 2023-05-10 Yuji Omachi , Nen Saito , Chikara Furusawa

This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…

Information Theory · Computer Science 2023-04-21 Yonatan Yehezkeally , Daniella Bar-Lev , Sagi Marcovich , Eitan Yaakobi

The concepts of orthology, paralogy, and xenology play a key role in molecular evolution. Orthology and paralogy distinguish whether a pair of genes originated by speciation or duplication. The corresponding binary relations on a set of…

Discrete Mathematics · Computer Science 2016-03-09 Marc Hellmuth , Peter F. Stadler , Nicolas Wieseke