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Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

Behavior Trees are a task switching policy representation that can grant reactiveness and fault tolerance. Moreover, because of their structure and modularity, a variety of methods can be used to generate them automatically. In this short…

Robotics · Computer Science 2023-01-18 Matteo Iovino , Christian Smith

We propose a general approach to compute the seed sensitivity, that can be applied to different definitions of seeds. It treats separately three components of the seed sensitivity problem - a set of target alignments, an associated…

Other Computer Science · Computer Science 2011-01-18 Gregory Kucherov , Laurent Noe , Mikhail Roytberg

CCS can be considered as a most natural extension of finite state automata in which interaction is made possible thanks to parallel composition. We propose here a similar extension for top-down tree automata. We introduce a parallel…

Logic in Computer Science · Computer Science 2013-06-10 Thomas Ehrhard , Ying Jiang

We provide new insights on the determinization and minimization of tree automata using congruences on trees. From this perspective, we study a Brzozowski's style minimization algorithm for tree automata. First, we prove correct this method…

Formal Languages and Automata Theory · Computer Science 2023-06-22 Pierre Ganty , Elena Gutiérrez , Pedro Valero

This paper presents the first step of a wider research effort to apply tree automata completion to the static analysis of functional programs. Tree Automata Completion is a family of techniques for computing or approximating the set of…

Logic in Computer Science · Computer Science 2014-10-14 Thomas Genet

Labeled unranked trees are used as a model of XML documents, and logical languages for them have been studied actively over the past several years. Such logics have different purposes: some are better suited for extracting data, some for…

Logic in Computer Science · Computer Science 2017-01-11 Leonid Libkin

The automatic generation of decision trees based on off-line reasoning on models of a domain is a reasonable compromise between the advantages of using a model-based approach in technical domains and the constraints imposed by embedded…

Artificial Intelligence · Computer Science 2011-06-28 L. Console , C. Picardi , D. Theseider Duprè

Trees are partial orderings where every element has a linearly ordered set of smaller elements. We define and study several natural notions of completeness of trees, extending Dedekind completeness of linear orders and Dedekind-MacNeille…

Combinatorics · Mathematics 2023-01-18 Valentin Goranko , Ruaan Kellerman , Alberto Zanardo

This paper contains results related to synthesis and presentation of abstract automata by fragments of behaviour and investigates the structure of the classes of finite connected initial output-less automata specified by systems of defining…

Formal Languages and Automata Theory · Computer Science 2017-12-15 Oleksiy Kurganskyy , Alexandra Maximova

The use of terms from natural and social scientific titles and abstracts is studied from the perspective of sublanguages and their specialized dictionaries. Different notions of sublanguage distinctiveness are explored. Objective methods…

cmp-lg · Computer Science 2008-02-03 Robert M. Losee , Stephanie W. Haas

Tangle-tree theorems are an important tool in structural graph theory, and abstract separation systems are a very general setting in which tangle-tree theorems can still be formulated and proven. For infinite abstract separation systems, so…

Combinatorics · Mathematics 2023-09-14 Ann-Kathrin Elm , Hendrik Heine

We propose a general approach to compute the seed sensitivity, that can be applied to different definitions of seeds. It treats separately three components of the seed sensitivity problem -- a set of target alignments, an associated…

Data Structures and Algorithms · Computer Science 2010-01-19 Gregory Kucherov , Laurent Noé , Mihkail Roytberg

Automata for unordered unranked trees are relevant for defining schemas and queries for data trees in Json or Xml format. While the existing notions are well-investigated concerning expressiveness, they all lack a proper notion of…

Formal Languages and Automata Theory · Computer Science 2014-08-27 Adrien Boiret , Vincent Hugot , Joachim Niehren , Ralf Treinen

In this paper, we extend the notion of tree language quotients to bottom-up quotients. Instead of computing the residual of a tree language from top to bottom and producing a list of tree languages, we show how to compute a set of k-ary…

Formal Languages and Automata Theory · Computer Science 2015-06-10 Jean-Marc Champarnaud , Ludovic Mignot , Nadia Ouali-Sebti , Djelloul Ziadi

We give a new simple proof of the decidability of the First Order Theory of (omega^omega^i,+) and the Monadic Second Order Theory of (omega^i,<), improving the complexity in both cases. Our algorithm is based on tree automata and a new…

Computer Science and Game Theory · Computer Science 2007-05-23 Thierry Cachat

The class of self-nested trees presents remarkable compression properties because of the systematic repetition of subtrees in their structure. In this paper, we provide a better combinatorial characterization of this specific family of…

Data Structures and Algorithms · Computer Science 2018-10-26 Romain Azaïs , Jean-Baptiste Durand , Christophe Godin

We introduce a model of register automata over infinite trees with extrema constraints. Such an automaton can store elements of a linearly ordered domain in its registers, and can compare those values to the suprema and infima of register…

Logic in Computer Science · Computer Science 2023-06-22 Szymon Toruńczyk , Thomas Zeume

A data tree is an unranked ordered tree whose every node is labelled by a letter from a finite alphabet and an element ("datum") from an infinite set, where the latter can only be compared for equality. The article considers alternating…

Logic in Computer Science · Computer Science 2010-06-15 Marcin Jurdzinski , Ranko Lazic

We consider the problem of minimising the number of states in a multiplicity tree automaton over the field of rational numbers. We give a minimisation algorithm that runs in polynomial time assuming unit-cost arithmetic. We also show that a…

Formal Languages and Automata Theory · Computer Science 2019-03-14 Stefan Kiefer , Ines Marusic , James Worrell