English
Related papers

Related papers: A kernel for time series based on global alignment…

200 papers

In this work, we consider the problem of pattern matching under the dynamic time warping (DTW) distance motivated by potential applications in the analysis of biological data produced by the third generation sequencing. To measure the DTW…

Data Structures and Algorithms · Computer Science 2022-09-01 Garance Gourdel , Anne Driemel , Pierre Peterlongo , Tatiana Starikovskaya

The classification of time series data is a well-studied problem with numerous practical applications, such as medical diagnosis and speech recognition. A popular and effective approach is to classify new time series in the same way as…

Machine Learning · Computer Science 2019-01-29 Ricards Marcinkevics , Steven Kelk , Carlo Galuzzi , Berthold Stegemann

In many applications data is naturally presented in terms of orderings of some basic elements or symbols. Reasoning about such data requires a notion of similarity capable of handling sequences of different lengths. In this paper we…

Machine Learning · Computer Science 2015-01-27 Andrea Baisero , Florian T. Pokorny , Carl Henrik Ek

We give the first subquadratic-time approximation schemes for dynamic time warping (DTW) and edit distance (ED) of several natural families of point sequences in $\mathbb{R}^d$, for any fixed $d \ge 1$. In particular, our algorithms compute…

Computational Geometry · Computer Science 2016-01-11 Pankaj K. Agarwal , Kyle Fox , Jiangwei Pan , Rex Ying

Time Series Clustering is an important subroutine in many higher-level data mining analyses, including data editing for classifiers, summarization, and outlier detection. It is well known that for similarity search the superiority of…

Machine Learning · Computer Science 2016-12-05 Nurjahan Begum , Liudmila Ulanova , Hoang Anh Dau , Jun Wang , Eamonn Keogh

Elastic distances like dynamic time warping (DTW) are central to time series machine learning because they compare sequences under local temporal misalignment. Soft-DTW is an adaptation of DTW that can be used as a gradient-based loss by…

Machine Learning · Computer Science 2026-05-04 Christopher Holder , Anthony Bagnall

Temporal alignment of sequences is a fundamental challenge in many applications, such as computer vision and bioinformatics, where local time shifting needs to be accounted for. Misalignment can lead to poor model generalization, especially…

Machine Learning · Computer Science 2025-01-10 Afek Steinberg , Ran Eisenberg , Ofir Lindenbaum

We present algorithms for the computation of $\varepsilon$-coresets for $k$-median clustering of point sequences in $\mathbb{R}^d$ under the $p$-dynamic time warping (DTW) distance. Coresets under DTW have not been investigated before, and…

Computational Geometry · Computer Science 2024-03-08 Jacobus Conradi , Benedikt Kolbe , Ioannis Psarros , Dennis Rohde

Prediction of dynamical time series with additive noise using support vector machines or kernel based regression has been proved to be consistent for certain classes of discrete dynamical systems. Consistency implies that these methods are…

Machine Learning · Statistics 2018-06-21 Raymundo Navarrete , Divakar Viswanath

The Dynamic Time Warping (DTW) distance is a popular measure of similarity for a variety of sequence data. For comparing polygonal curves $\pi, \sigma$ in $\mathbb{R}^d$, it provides a robust, outlier-insensitive alternative to the…

Computational Geometry · Computer Science 2022-03-17 Karl Bringmann , Sándor Kisfaludi-Bak , Marvin Künnemann , Dániel Marx , André Nusser

We are interested in the decomposition of motion data into a sparse linear combination of base functions which enable efficient data processing. We combine two prominent frameworks: dynamic time warping (DTW), which offers particularly…

Machine Learning · Computer Science 2019-03-13 Babak Hosseini , Felix Hülsmann , Mario Botsch , Barbara Hammer

The paper presents a novel method of finding a fragment in a long temporal sequence similar to the set of shorter sequences. We are the first to propose an algorithm for such a search that does not rely on computing the average sequence…

Data Structures and Algorithms · Computer Science 2024-09-04 Łukasz Borchmann , Dawid Jurkiewicz , Filip Graliński , Tomasz Górecki

Measuring similarities between unlabeled time series trajectories is an important problem in domains as diverse as medicine, astronomy, finance, and computer vision. It is often unclear what is the appropriate metric to use because of the…

Machine Learning · Computer Science 2018-10-25 Abubakar Abid , James Zou

Time series are an interesting frontier for kernel-based methods, for the simple reason that there is no kernel designed to represent them and their unique characteristics in full generality. Existing sequential kernels ignore the time…

Machine Learning · Statistics 2020-04-21 Ahmed Guecioueur , Franz J. Király

We investigate usage of dynamic time warping (DTW) algorithm for aligning raw signal data from MinION sequencer. DTW is mostly using for fast alignment for selective sequencing to quickly determine whether a read comes from sequence of…

Quantitative Methods · Quantitative Biology 2017-05-05 Vladimír Boža , Broňa Brejová , Tomáš Vinař

We present an approach for computationally efficient dynamic time warping (DTW) and clustering of time-series data. The method frames the dynamic warping of time series datasets as an optimisation problem solved using dynamic programming,…

Signal Processing · Electrical Eng. & Systems 2024-10-10 Volkan Kumtepeli , Rebecca Perriment , David A. Howey

Dynamic Time Warping is arguably the most popular similarity measure for time series, where we define a time series to be a one-dimensional polygonal curve. The drawback of Dynamic Time Warping is that it is sensitive to the sampling rate…

Computational Geometry · Computer Science 2023-04-18 Kevin Buchin , André Nusser , Sampson Wong

With the increase of available time series data, predicting their class labels has been one of the most important challenges in a wide range of disciplines. Recent studies on time series classification show that convolutional neural…

Machine Learning · Computer Science 2021-04-07 Dongha Lee , Seonghyeon Lee , Hwanjo Yu

Motif discovery is a fundamental step in data mining tasks for time-series data such as clustering, classification and anomaly detection. Even though many papers have addressed the problem of how to find motifs in time-series by proposing…

Machine Learning · Computer Science 2020-04-20 Maria Inês Silva , Roberto Henriques

In the light of regularized dynamic time warping kernels, this paper re-considers the concept of time elastic centroid for a setof time series. We derive a new algorithm based on a probabilistic interpretation of kernel alignment matrices.…

Machine Learning · Computer Science 2019-07-12 Pierre-François Marteau